1 HAMP#1
171-240 aa · 70 aa · 15.0% of protein
Raw token
HAMP:171:0.000000000511:240:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5Z00_RS04565
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_040909085
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040909085#AB5Z00_RS04565Stable P2CS identifier used across views.
GenomeGCF_040909085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 467 aa (51.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa467 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-304 aa · 60 aa · 12.8% of protein
Raw token
HisKA:245:0.000000000000672:304:60:643 HATPase_c#3
356-464 aa · 109 aa · 23.3% of protein
Raw token
HATPase_c:356:7.32e-31:464:109:109- Raw architecture: HAMP:171:0.000000000511:240:70:69#HisKA:245:0.000000000000672:304:60:64#HATPase_c:356:7.32e-31:464:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040909085::NZ_JBDGDE010000004.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span104886-107010Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040909085::NZ_JBDGDE010000004.1::G00011Context members
AB5Z00_RS04565AB5Z00_RS04570
Partner locus tags
AB5Z00_RS04565AB5Z00_RS04570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101870736.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5PBI2Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5PBI2_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5Z00_RS04565Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDGDE010000004.1Sequence record reported by the local genomic context database.
Genomic interval104 886-106 289 nt1 404 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span104 886-107 010 ntGCF_040909085::NZ_JBDGDE010000004.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040909085::NZ_JBDGDE010000004.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDGDE010000004.1All displayed genes belong to this local TCS context.
Neighborhood span104 886-107 010 nt2 125 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
104 886 nt107 010 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5Z00_RS04565GCF_040909085#AB5Z00_RS04565
HKClassicCurrent focus
104 886-106 289 nt · Reverse (-)
AB5Z00_RS04570GCF_040909085#AB5Z00_RS04570
RROmpR
106 309-107 010 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865325#CDL26_RS09115Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1750747
Simplified PFAM architecture for HKOC_1750747
PFAM domain coverage: 215 / 467 aa (46.0%)
1 aa467 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[195-239] | HisKA[246-307] | HATPase_c[357-464]
- Domain count: 3
- Matched identifier: HKOC_1750747
- Positioned domains: HAMP 195-239 ; HisKA 246-307 ; HATPase_c 357-464
Cluster members and taxonomy
Representative gene: GCF_002865325#CDL26_RS09115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_040909085
AssemblyASM4090908v1 · Scaffoldhaploid
Genome composition3 589 586 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 97 · HK 46 · RR 50CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key