1 HisKA#1
356-414 aa · 59 aa · 10.2% of protein
Raw token
HisKA:356:0.000000000535:414:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB3X49_RS07935
Histidine kinase, Classic
Bacillus sp. C30 · GCF_040838255
ClassHKTypeClassicLength580 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040838255#AB3X49_RS07935Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length580 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 580 aa (28.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa580 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
471-578 aa · 108 aa · 18.6% of protein
Raw token
HATPase_c:471:4.31e-31:578:108:109- Raw architecture: HisKA:356:0.000000000535:414:59:64#HATPase_c:471:4.31e-31:578:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040838255::NZ_JBFPJH010000047.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17496-19949Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAB3X49_07930RefSeq proteinWP_367961394.1
Context group ID
GCF_040838255::NZ_JBFPJH010000047.1::G00034Context members
AB3X49_RS07935AB3X49_RS07940
Partner locus tags
AB3X49_RS07935AB3X49_RS07940
Partner old locus tags
AB3X49_07930AB3X49_07935
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_367961394.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB3X49_RS07935Primary locus identifier stored in the genes table.
Old locus tagAB3X49_07930Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBFPJH010000047.1Sequence record reported by the local genomic context database.
Genomic interval17 496-19 238 nt1 743 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 496-19 949 ntGCF_040838255::NZ_JBFPJH010000047.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040838255::NZ_JBFPJH010000047.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBFPJH010000047.1All displayed genes belong to this local TCS context.
Neighborhood span17 496-19 949 nt2 454 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 496 nt19 949 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB3X49_RS07935GCF_040838255#AB3X49_RS07935
HKClassicCurrent focus
17 496-19 238 nt · Reverse (-)
AB3X49_RS07940GCF_040838255#AB3X49_RS07940
RROmpR
19 248-19 949 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040838255#AB3X49_RS07935The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1166260
Simplified PFAM architecture for HKOC_1166260
PFAM domain coverage: 167 / 580 aa (28.8%)
1 aa580 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[356-414] | HATPase_c[471-578]
- Domain count: 2
- Matched identifier: HKOC_1166260
- Positioned domains: HisKA 356-414 ; HATPase_c 471-578
Cluster members and taxonomy
Representative gene: GCF_040838255#AB3X49_RS07935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 387 733 · GCF_040838255
AssemblyASM4083825v1 · Contighaploid
Genome composition4 298 214 bp · 36,0% GCBacillus sp. C30
Signal transduction countsGenes 73 · HK 38 · RR 35CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key