1 HAMP#1
161-229 aa · 69 aa · 15.1% of protein
Raw token
HAMP:161:0.00000000000000137:229:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB3X49_RS04655
Histidine kinase, Classic
Bacillus sp. C30 · GCF_040838255
ClassHKTypeClassicLength456 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040838255#AB3X49_RS04655Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length456 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 456 aa (53.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa456 aa
Domain-by-domain annotation3 items
2 HisKA#2
234-298 aa · 65 aa · 14.3% of protein
Raw token
HisKA:234:0.0000000000000179:298:65:643 HATPase_c#3
346-454 aa · 109 aa · 23.9% of protein
Raw token
HATPase_c:346:2.45e-36:454:109:109- Raw architecture: HAMP:161:0.00000000000000137:229:69:69#HisKA:234:0.0000000000000179:298:65:64#HATPase_c:346:2.45e-36:454:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040838255::NZ_JBFPJH010000021.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23111-25170Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAB3X49_04655RefSeq proteinWP_367960715.1
Context group ID
GCF_040838255::NZ_JBFPJH010000021.1::G00014Context members
AB3X49_RS04650AB3X49_RS04655
Partner locus tags
AB3X49_RS04650AB3X49_RS04655
Partner old locus tags
AB3X49_04650AB3X49_04655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_367960715.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB3X49_RS04655Primary locus identifier stored in the genes table.
Old locus tagAB3X49_04655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBFPJH010000021.1Sequence record reported by the local genomic context database.
Genomic interval23 800-25 170 nt1 371 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span23 111-25 170 ntGCF_040838255::NZ_JBFPJH010000021.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040838255::NZ_JBFPJH010000021.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBFPJH010000021.1All displayed genes belong to this local TCS context.
Neighborhood span23 111-25 170 nt2 060 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 111 nt25 170 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB3X49_RS04650GCF_040838255#AB3X49_RS04650
RROmpR
23 111-23 788 nt · Forward (+)
AB3X49_RS04655GCF_040838255#AB3X49_RS04655
HKClassicCurrent focus
23 800-25 170 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040838255#AB3X49_RS04655The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1897329
Simplified PFAM architecture for HKOC_1897329
PFAM domain coverage: 225 / 456 aa (49.3%)
1 aa456 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[178-229] | HisKA[235-298] | HATPase_c[346-454]
- Domain count: 3
- Matched identifier: HKOC_1897329
- Positioned domains: HAMP 178-229 ; HisKA 235-298 ; HATPase_c 346-454
Cluster members and taxonomy
Representative gene: GCF_040838255#AB3X49_RS04655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 387 733 · GCF_040838255
AssemblyASM4083825v1 · Contighaploid
Genome composition4 298 214 bp · 36,0% GCBacillus sp. C30
Signal transduction countsGenes 73 · HK 38 · RR 35CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key