1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:2.01e-34:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB3X49_RS07520
Response regulator OmpR family
Bacillus sp. C30 · GCF_040838255
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040838255#AB3X49_RS07520Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 223 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:145:3.03e-29:220:77:77- Raw architecture: Response_reg:4:2.01e-34:112:110:111#Trans_reg_C:145:3.03e-29:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040838255::NZ_JBFPJH010000043.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15957-17878Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAB3X49_07515RefSeq proteinWP_002091066.1
Context group ID
GCF_040838255::NZ_JBFPJH010000043.1::G00030Context members
AB3X49_RS07515AB3X49_RS07520
Partner locus tags
AB3X49_RS07515AB3X49_RS07520
Partner old locus tags
AB3X49_07510AB3X49_07515
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002091066.1Primary protein accession used for annex mappings.
UniProt accessionR8HPQ7Primary UniProt accession resolved in the annex database.
UniProt IDR8HPQ7_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB3X49_RS07520Primary locus identifier stored in the genes table.
Old locus tagAB3X49_07515Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBFPJH010000043.1Sequence record reported by the local genomic context database.
Genomic interval17 207-17 878 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 957-17 878 ntGCF_040838255::NZ_JBFPJH010000043.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040838255::NZ_JBFPJH010000043.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBFPJH010000043.1All displayed genes belong to this local TCS context.
Neighborhood span15 957-17 878 nt1 922 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 957 nt17 878 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB3X49_RS07515GCF_040838255#AB3X49_RS07515
HKClassic
15 957-17 195 nt · Reverse (-)
AB3X49_RS07520GCF_040838255#AB3X49_RS07520
RROmpRCurrent focus
17 207-17 878 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS02475Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1586790
Simplified PFAM architecture for RROC_1586790
PFAM domain coverage: 185 / 223 aa (83.0%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-220]
- Domain count: 2
- Matched identifier: RROC_1586790
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 145-220 ; Trans_reg_C 145-220
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS02475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 387 733 · GCF_040838255
AssemblyASM4083825v1 · Contighaploid
Genome composition4 298 214 bp · 36,0% GCBacillus sp. C30
Signal transduction countsGenes 73 · HK 38 · RR 35CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key