1 HAMP#1
198-268 aa · 71 aa · 14.0% of protein
Raw token
HAMP:198:0.0000000141:268:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB2553_RS29505
Histidine kinase, Classic
Bacillus mycoides · GCF_040797025
ClassHKTypeClassicLength506 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040797025#AB2553_RS29505Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length506 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 506 aa (49.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa506 aa
Domain-by-domain annotation3 items
2 HisKA#2
279-346 aa · 68 aa · 13.4% of protein
Raw token
HisKA:279:1.01e-16:346:68:643 HATPase_c#3
389-498 aa · 110 aa · 21.7% of protein
Raw token
HATPase_c:389:3.08e-32:498:110:109- Raw architecture: HAMP:198:0.0000000141:268:71:69#HisKA:279:1.01e-16:346:68:64#HATPase_c:389:3.08e-32:498:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040797025::NZ_JBFNPP010000049.1::G00070
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6583-8786Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAB2553_29505RefSeq proteinWP_078205169.1
Context group ID
GCF_040797025::NZ_JBFNPP010000049.1::G00070Context members
AB2553_RS29505AB2553_RS29510
Partner locus tags
AB2553_RS29505AB2553_RS29510
Partner old locus tags
AB2553_29505AB2553_29510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_078205169.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S9TL61Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S9TL61_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB2553_RS29505Primary locus identifier stored in the genes table.
Old locus tagAB2553_29505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBFNPP010000049.1Sequence record reported by the local genomic context database.
Genomic interval6 583-8 103 nt1 521 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 583-8 786 ntGCF_040797025::NZ_JBFNPP010000049.1::G00070
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040797025::NZ_JBFNPP010000049.1::G00070Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBFNPP010000049.1All displayed genes belong to this local TCS context.
Neighborhood span6 583-8 786 nt2 204 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 583 nt8 786 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB2553_RS29505GCF_040797025#AB2553_RS29505
HKClassicCurrent focus
6 583-8 103 nt · Reverse (-)
AB2553_RS29510GCF_040797025#AB2553_RS29510
RROmpR
8 100-8 786 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014585#BW897_RS21540Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1444816
Simplified PFAM architecture for HKOC_1444816
PFAM domain coverage: 223 / 506 aa (44.1%)
1 aa506 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[223-268] | HisKA[280-345] | HATPase_c[389-499]
- Domain count: 3
- Matched identifier: HKOC_1444816
- Positioned domains: HAMP 223-268 ; HisKA 280-345 ; HATPase_c 389-499
Cluster members and taxonomy
Representative gene: GCF_002014585#BW897_RS21540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_040797025
AssemblyASM4079702v1 · Contighaploid
Genome composition5 938 255 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 121 · HK 66 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key