1 PAS_4#1
335-448 aa · 114 aa · 13.9% of protein
Raw token
PAS_4:335:0.000000000000245:448:122:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB2553_RS24765
Histidine kinase, Classic
Bacillus mycoides · GCF_040797025
ClassHKTypeClassicLength820 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040797025#AB2553_RS24765Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PAS_4PASHisKAHATPase_c
Protein length820 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage369 / 820 aa (45.0%)Merged over positioned domains only.
Domain description1 PAS_4,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa820 aa
Domain-by-domain annotation4 items
2 PAS#2
467-557 aa · 91 aa · 11.1% of protein
Raw token
PAS:467:0.000000000747:557:93:1133 HisKA#3
598-659 aa · 62 aa · 7.6% of protein
Raw token
HisKA:598:0.0000000000000296:659:62:644 HATPase_c#4
706-807 aa · 102 aa · 12.4% of protein
Raw token
HATPase_c:706:1.05e-24:807:105:109- Raw architecture: PAS_4:335:0.000000000000245:448:122:110#PAS:467:0.000000000747:557:93:113#HisKA:598:0.0000000000000296:659:62:64#HATPase_c:706:1.05e-24:807:105:109
- Domain description: 1 PAS_4,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040797025::NZ_JBFNPP010000027.1::G00055
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span73011-75473Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAB2553_24765RefSeq proteinWP_367631221.1
Context group ID
GCF_040797025::NZ_JBFNPP010000027.1::G00055Context members
AB2553_RS24765
Partner locus tags
AB2553_RS24765
Partner old locus tags
AB2553_24765
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_367631221.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB2553_RS24765Primary locus identifier stored in the genes table.
Old locus tagAB2553_24765Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBFNPP010000027.1Sequence record reported by the local genomic context database.
Genomic interval73 011-75 473 nt2 463 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span73 011-75 473 ntGCF_040797025::NZ_JBFNPP010000027.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040797025::NZ_JBFNPP010000027.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBFNPP010000027.1All displayed genes belong to this local TCS context.
Neighborhood span73 011-75 473 nt2 463 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 011 nt75 473 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB2553_RS24765GCF_040797025#AB2553_RS24765
HKClassicCurrent focus
73 011-75 473 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040797025#AB2553_RS24765The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + PAS_4 + PAS + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0530530
Simplified PFAM architecture for HKOC_0530530
PFAM domain coverage: 511 / 820 aa (62.3%)
1 aa820 aa
5TM-5TMR_LYTPAS_4PASHisKAHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + PAS_4 + PAS + HisKA + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[22-142] | PAS_4[336-448] | PAS[467-577] | HisKA[598-659] | HATPase_c[705-808]
- Domain count: 5
- Matched identifier: HKOC_0530530
- Positioned domains: 5TM-5TMR_LYT 22-142 ; PAS_4 336-448 ; PAS 467-577 ; HisKA 598-659 ; HATPase_c 705-808
Cluster members and taxonomy
Representative gene: GCF_040797025#AB2553_RS24765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_040797025
AssemblyASM4079702v1 · Contighaploid
Genome composition5 938 255 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 121 · HK 66 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key