1 HAMP#1
47-117 aa · 71 aa · 20.5% of protein
Raw token
HAMP:47:0.0000000000301:117:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB2553_RS24635
Histidine kinase, Classic
Bacillus mycoides · GCF_040797025
ClassHKTypeClassicLength346 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040797025#AB2553_RS24635Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length346 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 346 aa (71.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa346 aa
Domain-by-domain annotation3 items
2 HisKA#2
121-187 aa · 67 aa · 19.4% of protein
Raw token
HisKA:121:0.000000000000455:187:67:643 HATPase_c#3
229-338 aa · 110 aa · 31.8% of protein
Raw token
HATPase_c:229:6.77e-30:338:110:109- Raw architecture: HAMP:47:0.0000000000301:117:71:69#HisKA:121:0.000000000000455:187:67:64#HATPase_c:229:6.77e-30:338:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040797025::NZ_JBFNPP010000027.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41646-43503Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAB2553_24635RefSeq proteinWP_367631226.1
Context group ID
GCF_040797025::NZ_JBFNPP010000027.1::G00054Context members
AB2553_RS24630AB2553_RS24635
Partner locus tags
AB2553_RS24630AB2553_RS24635
Partner old locus tags
AB2553_24630AB2553_24635
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_367631226.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB2553_RS24635Primary locus identifier stored in the genes table.
Old locus tagAB2553_24635Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBFNPP010000027.1Sequence record reported by the local genomic context database.
Genomic interval42 463-43 503 nt1 041 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 646-43 503 ntGCF_040797025::NZ_JBFNPP010000027.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040797025::NZ_JBFNPP010000027.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBFNPP010000027.1All displayed genes belong to this local TCS context.
Neighborhood span41 646-43 503 nt1 858 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 646 nt43 503 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB2553_RS24630GCF_040797025#AB2553_RS24630
RROmpR
41 646-42 335 nt · Forward (+)
AB2553_RS24635GCF_040797025#AB2553_RS24635
HKClassicCurrent focus
42 463-43 503 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040797025#AB2553_RS24635The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2818395
Simplified PFAM architecture for HKOC_2818395
PFAM domain coverage: 228 / 346 aa (65.9%)
1 aa346 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[65-116] | HisKA[122-187] | HATPase_c[230-339]
- Domain count: 3
- Matched identifier: HKOC_2818395
- Positioned domains: HAMP 65-116 ; HisKA 122-187 ; HATPase_c 230-339
Cluster members and taxonomy
Representative gene: GCF_040797025#AB2553_RS24635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_040797025
AssemblyASM4079702v1 · Contighaploid
Genome composition5 938 255 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 121 · HK 66 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key