1 Response_reg#1
4-114 aa · 111 aa · 48.5% of protein
Raw token
Response_reg:4:2.03e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB2553_RS24605
Response regulator OmpR family
Bacillus mycoides · GCF_040797025
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040797025#AB2553_RS24605Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 229 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-224 aa · 74 aa · 32.3% of protein
Raw token
Trans_reg_C:151:6.18e-28:224:74:77- Raw architecture: Response_reg:4:2.03e-34:114:111:111#Trans_reg_C:151:6.18e-28:224:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040797025::NZ_JBFNPP010000027.1::G00052
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span37346-38035Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAB2553_24605RefSeq proteinWP_116349222.1
Context group ID
GCF_040797025::NZ_JBFNPP010000027.1::G00052Context members
AB2553_RS24605
Partner locus tags
AB2553_RS24605
Partner old locus tags
AB2553_24605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_116349222.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB2553_RS24605Primary locus identifier stored in the genes table.
Old locus tagAB2553_24605Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBFNPP010000027.1Sequence record reported by the local genomic context database.
Genomic interval37 346-38 035 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span37 346-38 035 ntGCF_040797025::NZ_JBFNPP010000027.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040797025::NZ_JBFNPP010000027.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBFNPP010000027.1All displayed genes belong to this local TCS context.
Neighborhood span37 346-38 035 nt690 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 346 nt38 035 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB2553_RS24605GCF_040797025#AB2553_RS24605
RROmpRCurrent focus
37 346-38 035 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003399505#DZB88_RS26900Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1260844
Simplified PFAM architecture for RROC_1260844
PFAM domain coverage: 184 / 229 aa (80.3%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-114] | Trans_reg_C[151-223]
- Domain count: 2
- Matched identifier: RROC_1260844
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; Trans_reg_C 151-223 ; Trans_reg_C 151-223
Cluster members and taxonomy
Representative gene: GCF_003399505#DZB88_RS26900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_040797025
AssemblyASM4079702v1 · Contighaploid
Genome composition5 938 255 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 121 · HK 66 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key