1 GAF#1
23-163 aa · 141 aa · 21.0% of protein
Raw token
GAF:23:0.00000000000000348:163:143:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB2553_RS19740
Histidine kinase, Classic
Bacillus mycoides · GCF_040797025
ClassHKTypeClassicLength672 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040797025#AB2553_RS19740Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFPAS_9HisKAHATPase_c
Protein length672 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage392 / 672 aa (58.3%)Merged over positioned domains only.
Domain description1 GAF,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa672 aa
Domain-by-domain annotation4 items
2 PAS_9#2
347-441 aa · 95 aa · 14.1% of protein
Raw token
PAS_9:347:0.00000161:441:107:1023 HisKA#3
459-516 aa · 58 aa · 8.6% of protein
Raw token
HisKA:459:0.000000000000013:516:58:644 HATPase_c#4
568-665 aa · 98 aa · 14.6% of protein
Raw token
HATPase_c:568:2.85e-19:665:103:109- Raw architecture: GAF:23:0.00000000000000348:163:143:133#PAS_9:347:0.00000161:441:107:102#HisKA:459:0.000000000000013:516:58:64#HATPase_c:568:2.85e-19:665:103:109
- Domain description: 1 GAF,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040797025::NZ_JBFNPP010000017.1::G00041
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span50666-52684Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAB2553_19740RefSeq proteinWP_367630919.1
Context group ID
GCF_040797025::NZ_JBFNPP010000017.1::G00041Context members
AB2553_RS19740
Partner locus tags
AB2553_RS19740
Partner old locus tags
AB2553_19740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_367630919.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB2553_RS19740Primary locus identifier stored in the genes table.
Old locus tagAB2553_19740Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBFNPP010000017.1Sequence record reported by the local genomic context database.
Genomic interval50 666-52 684 nt2 019 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span50 666-52 684 ntGCF_040797025::NZ_JBFNPP010000017.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040797025::NZ_JBFNPP010000017.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBFNPP010000017.1All displayed genes belong to this local TCS context.
Neighborhood span50 666-52 684 nt2 019 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 666 nt52 684 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB2553_RS19740GCF_040797025#AB2553_RS19740
HKClassicCurrent focus
50 666-52 684 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040797025#AB2553_RS19740The current gene is the representative for this cluster.
PFAM architectureGAF + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0841907
Simplified PFAM architecture for HKOC_0841907
PFAM domain coverage: 300 / 672 aa (44.6%)
1 aa672 aa
GAFHisKAHATPase_c
- Simplified architecture: GAF + HisKA + HATPase_c
- Raw architecture: GAF[24-163] | HisKA[459-516] | HATPase_c[565-666]
- Domain count: 3
- Matched identifier: HKOC_0841907
- Positioned domains: GAF 24-163 ; HisKA 459-516 ; HATPase_c 565-666
Cluster members and taxonomy
Representative gene: GCF_040797025#AB2553_RS19740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_040797025
AssemblyASM4079702v1 · Contighaploid
Genome composition5 938 255 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 121 · HK 66 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key