1 Response_reg#1
3-112 aa · 110 aa · 51.2% of protein
Raw token
Response_reg:3:3.11e-34:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB2553_RS10715
Response regulator OmpR family
Bacillus mycoides · GCF_040797025
ClassRRTypeOmpRLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040797025#AB2553_RS10715Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 215 aa (84.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
140-210 aa · 71 aa · 33.0% of protein
Raw token
Trans_reg_C:140:2.75e-28:210:76:77- Raw architecture: Response_reg:3:3.11e-34:112:111:111#Trans_reg_C:140:2.75e-28:210:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040797025::NZ_JBFNPP010000007.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18304-20320Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAB2553_10715RefSeq proteinWP_000865958.1
Context group ID
GCF_040797025::NZ_JBFNPP010000007.1::G00027Context members
AB2553_RS10710AB2553_RS10715
Partner locus tags
AB2553_RS10710AB2553_RS10715
Partner old locus tags
AB2553_10710AB2553_10715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000865958.1Primary protein accession used for annex mappings.
UniProt accessionJ9CJN7Primary UniProt accession resolved in the annex database.
UniProt IDJ9CJN7_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB2553_RS10715Primary locus identifier stored in the genes table.
Old locus tagAB2553_10715Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBFNPP010000007.1Sequence record reported by the local genomic context database.
Genomic interval19 673-20 320 nt648 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span18 304-20 320 ntGCF_040797025::NZ_JBFNPP010000007.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040797025::NZ_JBFNPP010000007.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBFNPP010000007.1All displayed genes belong to this local TCS context.
Neighborhood span18 304-20 320 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 304 nt20 320 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB2553_RS10710GCF_040797025#AB2553_RS10710
HKClassic
18 304-19 680 nt · Reverse (-)
AB2553_RS10715GCF_040797025#AB2553_RS10715
RROmpRCurrent focus
19 673-20 320 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161335#BCERE0026_RS13115Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1906784
Simplified PFAM architecture for RROC_1906784
PFAM domain coverage: 180 / 215 aa (83.7%)
1 aa215 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[140-210]
- Domain count: 2
- Matched identifier: RROC_1906784
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 140-210 ; Trans_reg_C 140-210
Cluster members and taxonomy
Representative gene: GCF_000161335#BCERE0026_RS13115
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 77 total members. Page 1 / 2.
GCF_000161335#BCERE0026_RS13115 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_040797025
AssemblyASM4079702v1 · Contighaploid
Genome composition5 938 255 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 121 · HK 66 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key