1 GAF#1
29-166 aa · 138 aa · 26.4% of protein
Raw token
GAF:29:0.0000000000113:166:138:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB2553_RS06415
Histidine kinase, Classic
Bacillus mycoides · GCF_040797025
ClassHKTypeClassicLength523 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040797025#AB2553_RS06415Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFGAF_3HisKA_3HATPase_c
Protein length523 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage413 / 523 aa (79.0%)Merged over positioned domains only.
Domain description1 GAF,1 GAF_3,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa523 aa
Domain-by-domain annotation4 items
2 GAF_3#2
203-318 aa · 116 aa · 22.2% of protein
Raw token
GAF_3:203:0.000000000569:318:123:1293 HisKA_3#3
333-400 aa · 68 aa · 13.0% of protein
Raw token
HisKA_3:333:3.85e-21:400:68:684 HATPase_c#4
433-523 aa · 91 aa · 17.4% of protein
Raw token
HATPase_c:433:0.000000000901:523:106:109- Raw architecture: GAF:29:0.0000000000113:166:138:133#GAF_3:203:0.000000000569:318:123:129#HisKA_3:333:3.85e-21:400:68:68#HATPase_c:433:0.000000000901:523:106:109
- Domain description: 1 GAF,1 GAF_3,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040797025::NZ_JBFNPP010000003.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span306336-308575Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAB2553_06415RefSeq proteinWP_002016395.1
Context group ID
GCF_040797025::NZ_JBFNPP010000003.1::G00016Context members
AB2553_RS06410AB2553_RS06415
Partner locus tags
AB2553_RS06410AB2553_RS06415
Partner old locus tags
AB2553_06410AB2553_06415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002016395.1Primary protein accession used for annex mappings.
UniProt accessionR8HGP4Primary UniProt accession resolved in the annex database.
UniProt IDR8HGP4_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB2553_RS06415Primary locus identifier stored in the genes table.
Old locus tagAB2553_06415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBFNPP010000003.1Sequence record reported by the local genomic context database.
Genomic interval307 004-308 575 nt1 572 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span306 336-308 575 ntGCF_040797025::NZ_JBFNPP010000003.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040797025::NZ_JBFNPP010000003.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBFNPP010000003.1All displayed genes belong to this local TCS context.
Neighborhood span306 336-308 575 nt2 240 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
306 336 nt308 575 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB2553_RS06410GCF_040797025#AB2553_RS06410
RRNarL
306 336-306 983 nt · Reverse (-)
AB2553_RS06415GCF_040797025#AB2553_RS06415
HKClassicCurrent focus
307 004-308 575 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000018825#BCERKBAB4_RS26110Use this link to inspect the representative gene detail.
PFAM architectureGAF_2 + GAF_3 + HisKA_3 + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1379974
Simplified PFAM architecture for HKOC_1379974
PFAM domain coverage: 411 / 523 aa (78.6%)
1 aa523 aa
GAF_2GAF_3HisKA_3HATPase_c
- Simplified architecture: GAF_2 + GAF_3 + HisKA_3 + HATPase_c
- Raw architecture: GAF_2[28-166] | GAF_3[204-318] | HisKA_3[333-400] | HATPase_c[434-522]
- Domain count: 4
- Matched identifier: HKOC_1379974
- Positioned domains: GAF_2 28-166 ; GAF_3 204-318 ; HisKA_3 333-400 ; HATPase_c 434-522
Cluster members and taxonomy
Representative gene: GCF_000018825#BCERKBAB4_RS26110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_040797025
AssemblyASM4079702v1 · Contighaploid
Genome composition5 938 255 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 121 · HK 66 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key