1 Hpt#1
4-96 aa · 93 aa · 14.2% of protein
Raw token
Hpt:4:1.85e-16:96:93:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB2553_RS04455
Histidine kinase, CheA
Bacillus mycoides · GCF_040797025
ClassHKTypeCheALength656 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040797025#AB2553_RS04455Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length656 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage426 / 656 aa (64.9%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa656 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
273-332 aa · 60 aa · 9.1% of protein
Raw token
H-kinase_dim:273:0.00000000239:332:67:673 HATPase_c#3
380-519 aa · 140 aa · 21.3% of protein
Raw token
HATPase_c:380:8.2e-18:519:140:1094 CheW#4
524-656 aa · 133 aa · 20.3% of protein
Raw token
CheW:524:7.66e-22:656:139:138- Raw architecture: Hpt:4:1.85e-16:96:93:84#H-kinase_dim:273:0.00000000239:332:67:67#HATPase_c:380:8.2e-18:519:140:109#CheW:524:7.66e-22:656:139:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040797025::NZ_JBFNPP010000002.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span342845-345313Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAB2553_04455RefSeq proteinWP_002126563.1
Context group ID
GCF_040797025::NZ_JBFNPP010000002.1::G00011Context members
AB2553_RS04450AB2553_RS04455
Partner locus tags
AB2553_RS04450AB2553_RS04455
Partner old locus tags
AB2553_04450AB2553_04455
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002126563.1Primary protein accession used for annex mappings.
UniProt accessionR8N5Z3Primary UniProt accession resolved in the annex database.
UniProt IDR8N5Z3_BACCXDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB2553_RS04455Primary locus identifier stored in the genes table.
Old locus tagAB2553_04455Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBFNPP010000002.1Sequence record reported by the local genomic context database.
Genomic interval343 343-345 313 nt1 971 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span342 845-345 313 ntGCF_040797025::NZ_JBFNPP010000002.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040797025::NZ_JBFNPP010000002.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBFNPP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span342 845-345 313 nt2 469 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
342 845 nt345 313 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB2553_RS04450GCF_040797025#AB2553_RS04450
RRCheY
342 845-343 213 nt · Forward (+)
AB2553_RS04455GCF_040797025#AB2553_RS04455
HKCheACurrent focus
343 343-345 313 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291315#IEY_RS19200Use this link to inspect the representative gene detail.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0881177
Simplified PFAM architecture for HKOC_0881177
PFAM domain coverage: 509 / 656 aa (77.6%)
1 aa656 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[4-103] | P2[148-225] | H-kinase_dim[273-331] | HATPase_c[380-519] | CheW[525-656]
- Domain count: 5
- Matched identifier: HKOC_0881177
- Positioned domains: Hpt 4-103 ; P2 148-225 ; H-kinase_dim 273-331 ; HATPase_c 380-519 ; CheW 525-656
Cluster members and taxonomy
Representative gene: GCF_000291315#IEY_RS19200
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 46 over 46 total members. Page 1 / 1.
GCF_000291315#IEY_RS19200 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_040797025
AssemblyASM4079702v1 · Contighaploid
Genome composition5 938 255 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 121 · HK 66 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key