1 HAMP#1
287-355 aa · 69 aa · 11.4% of protein
Raw token
HAMP:287:0.00000000000439:355:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB2553_RS03640
Histidine kinase, Classic
Bacillus mycoides · GCF_040797025
ClassHKTypeClassicLength603 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040797025#AB2553_RS03640Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length603 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage225 / 603 aa (37.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa603 aa
Domain-by-domain annotation3 items
2 HisKA#2
381-444 aa · 64 aa · 10.6% of protein
Raw token
HisKA:381:4.81e-17:444:64:643 HATPase_c#3
489-580 aa · 92 aa · 15.3% of protein
Raw token
HATPase_c:489:1.15e-23:580:92:109- Raw architecture: HAMP:287:0.00000000000439:355:69:69#HisKA:381:4.81e-17:444:64:64#HATPase_c:489:1.15e-23:580:92:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040797025::NZ_JBFNPP010000002.1::G00009
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span187321-189132Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAB2553_03640RefSeq proteinWP_367629922.1
Context group ID
GCF_040797025::NZ_JBFNPP010000002.1::G00009Context members
AB2553_RS03640
Partner locus tags
AB2553_RS03640
Partner old locus tags
AB2553_03640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_367629922.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB2553_RS03640Primary locus identifier stored in the genes table.
Old locus tagAB2553_03640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBFNPP010000002.1Sequence record reported by the local genomic context database.
Genomic interval187 321-189 132 nt1 812 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span187 321-189 132 ntGCF_040797025::NZ_JBFNPP010000002.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040797025::NZ_JBFNPP010000002.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBFNPP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span187 321-189 132 nt1 812 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
187 321 nt189 132 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB2553_RS03640GCF_040797025#AB2553_RS03640
HKClassicCurrent focus
187 321-189 132 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040797025#AB2553_RS03640The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1040980
Simplified PFAM architecture for HKOC_1040980
PFAM domain coverage: 211 / 603 aa (35.0%)
1 aa603 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[305-354] | HisKA[381-444] | HATPase_c[491-587]
- Domain count: 3
- Matched identifier: HKOC_1040980
- Positioned domains: HAMP 305-354 ; HisKA 381-444 ; HATPase_c 491-587
Cluster members and taxonomy
Representative gene: GCF_040797025#AB2553_RS03640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_040797025
AssemblyASM4079702v1 · Contighaploid
Genome composition5 938 255 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 121 · HK 66 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key