1 HisKA_3#1
149-216 aa · 68 aa · 19.4% of protein
Raw token
HisKA_3:149:2.67e-22:216:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB2553_RS03515
Histidine kinase, Classic
Bacillus mycoides · GCF_040797025
ClassHKTypeClassicLength351 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040797025#AB2553_RS03515Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length351 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 351 aa (45.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa351 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
252-342 aa · 91 aa · 25.9% of protein
Raw token
HATPase_c:252:4.4e-16:342:106:109- Raw architecture: HisKA_3:149:2.67e-22:216:68:68#HATPase_c:252:4.4e-16:342:106:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040797025::NZ_JBFNPP010000002.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span166617-168301Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAB2553_03515RefSeq proteinWP_367629916.1
Context group ID
GCF_040797025::NZ_JBFNPP010000002.1::G00007Context members
AB2553_RS03515AB2553_RS03520
Partner locus tags
AB2553_RS03515AB2553_RS03520
Partner old locus tags
AB2553_03515AB2553_03520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_367629916.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB2553_RS03515Primary locus identifier stored in the genes table.
Old locus tagAB2553_03515Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBFNPP010000002.1Sequence record reported by the local genomic context database.
Genomic interval166 617-167 672 nt1 056 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span166 617-168 301 ntGCF_040797025::NZ_JBFNPP010000002.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040797025::NZ_JBFNPP010000002.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBFNPP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span166 617-168 301 nt1 685 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
166 617 nt168 301 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB2553_RS03515GCF_040797025#AB2553_RS03515
HKClassicCurrent focus
166 617-167 672 nt · Forward (+)
AB2553_RS03520GCF_040797025#AB2553_RS03520
RRNarL
167 669-168 301 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040797025#AB2553_RS03515The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2796210
Simplified PFAM architecture for HKOC_2796210
PFAM domain coverage: 160 / 351 aa (45.6%)
1 aa351 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[149-216] | HATPase_c[252-343]
- Domain count: 2
- Matched identifier: HKOC_2796210
- Positioned domains: HisKA_3 149-216 ; HATPase_c 252-343
Cluster members and taxonomy
Representative gene: GCF_040797025#AB2553_RS03515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_040797025
AssemblyASM4079702v1 · Contighaploid
Genome composition5 938 255 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 121 · HK 66 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key