1 Response_reg#1
7-119 aa · 113 aa · 49.1% of protein
Raw token
Response_reg:7:1.12e-28:119:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABVF88_RS09330
Response regulator, unclassified
Bacillus mycoides · GCF_040567675
ClassRRTypeunclassifiedLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040567675#ABVF88_RS09330Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 230 aa (49.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:7:1.12e-28:119:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040567675::NZ_JBEXCC010000005.1::G00025
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span186783-187475Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABVF88_09330RefSeq proteinWP_085309002.1
Context group ID
GCF_040567675::NZ_JBEXCC010000005.1::G00025Context members
ABVF88_RS09330
Partner locus tags
ABVF88_RS09330
Partner old locus tags
ABVF88_09330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_085309002.1Primary protein accession used for annex mappings.
UniProt accessionA0A1W6A3A1Primary UniProt accession resolved in the annex database.
UniProt IDA0A1W6A3A1_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABVF88_RS09330Primary locus identifier stored in the genes table.
Old locus tagABVF88_09330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBEXCC010000005.1Sequence record reported by the local genomic context database.
Genomic interval186 783-187 475 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span186 783-187 475 ntGCF_040567675::NZ_JBEXCC010000005.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040567675::NZ_JBEXCC010000005.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBEXCC010000005.1All displayed genes belong to this local TCS context.
Neighborhood span186 783-187 475 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
186 783 nt187 475 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABVF88_RS09330GCF_040567675#ABVF88_RS09330
RRunclassifiedCurrent focus
186 783-187 475 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002104575#B7492_RS03135Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_642 domains in the representative PFAM annotation.
PFAM architecture for RROC_1207899
Simplified PFAM architecture for RROC_1207899
PFAM domain coverage: 162 / 230 aa (70.4%)
1 aa230 aa
Response_regHTH_64
- Simplified architecture: Response_reg + HTH_64
- Raw architecture: Response_reg[7-118] | HTH_64[177-226]
- Domain count: 2
- Matched identifier: RROC_1207899
- Positioned domains: Response_reg 7-118 ; Response_reg 7-118 ; HTH_64 177-226 ; HTH_64 177-226
Cluster members and taxonomy
Representative gene: GCF_002104575#B7492_RS03135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_040567675
AssemblyASM4056767v1 · Scaffoldhaploid
Genome composition5 773 031 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 118 · HK 64 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key