1 HisKA#1
117-169 aa · 53 aa · 16.2% of protein
Raw token
HisKA:117:0.000000358:169:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABVF88_RS00890
Histidine kinase, Classic
Bacillus mycoides · GCF_040567675
ClassHKTypeClassicLength328 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040567675#ABVF88_RS00890Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length328 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 328 aa (50.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa328 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
215-327 aa · 113 aa · 34.5% of protein
Raw token
HATPase_c:215:8.39e-28:327:113:109- Raw architecture: HisKA:117:0.000000358:169:59:64#HATPase_c:215:8.39e-28:327:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040567675::NZ_JBEXCC010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span176144-177837Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABVF88_00890RefSeq proteinWP_354655653.1
Context group ID
GCF_040567675::NZ_JBEXCC010000001.1::G00002Context members
ABVF88_RS00885ABVF88_RS00890
Partner locus tags
ABVF88_RS00885ABVF88_RS00890
Partner old locus tags
ABVF88_00885ABVF88_00890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_354655653.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABVF88_RS00890Primary locus identifier stored in the genes table.
Old locus tagABVF88_00890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBEXCC010000001.1Sequence record reported by the local genomic context database.
Genomic interval176 851-177 837 nt987 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span176 144-177 837 ntGCF_040567675::NZ_JBEXCC010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040567675::NZ_JBEXCC010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBEXCC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span176 144-177 837 nt1 694 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
176 144 nt177 837 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABVF88_RS00885GCF_040567675#ABVF88_RS00885
RROmpR
176 144-176 848 nt · Forward (+)
ABVF88_RS00890GCF_040567675#ABVF88_RS00890
HKClassicCurrent focus
176 851-177 837 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040567675#ABVF88_RS00890The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2860945
Simplified PFAM architecture for HKOC_2860945
PFAM domain coverage: 110 / 328 aa (33.5%)
1 aa328 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[216-325]
- Domain count: 1
- Matched identifier: HKOC_2860945
- Positioned domains: HATPase_c 216-325
Cluster members and taxonomy
Representative gene: GCF_040567675#ABVF88_RS00890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_040567675
AssemblyASM4056767v1 · Scaffoldhaploid
Genome composition5 773 031 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 118 · HK 64 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key