1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:1.18e-32:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABVF88_RS09270
Response regulator OmpR family
Bacillus mycoides · GCF_040567675
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040567675#ABVF88_RS09270Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 223 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:145:8.81e-30:220:77:77- Raw architecture: Response_reg:4:1.18e-32:112:110:111#Trans_reg_C:145:8.81e-30:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040567675::NZ_JBEXCC010000005.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span173956-175877Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABVF88_09270RefSeq proteinWP_078178087.1
Context group ID
GCF_040567675::NZ_JBEXCC010000005.1::G00024Context members
ABVF88_RS09265ABVF88_RS09270
Partner locus tags
ABVF88_RS09265ABVF88_RS09270
Partner old locus tags
ABVF88_09265ABVF88_09270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_078178087.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABVF88_RS09270Primary locus identifier stored in the genes table.
Old locus tagABVF88_09270Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBEXCC010000005.1Sequence record reported by the local genomic context database.
Genomic interval175 206-175 877 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span173 956-175 877 ntGCF_040567675::NZ_JBEXCC010000005.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040567675::NZ_JBEXCC010000005.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBEXCC010000005.1All displayed genes belong to this local TCS context.
Neighborhood span173 956-175 877 nt1 922 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
173 956 nt175 877 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABVF88_RS09265GCF_040567675#ABVF88_RS09265
HKClassic
173 956-175 194 nt · Reverse (-)
ABVF88_RS09270GCF_040567675#ABVF88_RS09270
RROmpRCurrent focus
175 206-175 877 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014545#BW891_RS08740Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1595960
Simplified PFAM architecture for RROC_1595960
PFAM domain coverage: 185 / 223 aa (83.0%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-220]
- Domain count: 2
- Matched identifier: RROC_1595960
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 145-220 ; Trans_reg_C 145-220
Cluster members and taxonomy
Representative gene: GCF_002014545#BW891_RS08740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_040567675
AssemblyASM4056767v1 · Scaffoldhaploid
Genome composition5 773 031 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 118 · HK 64 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key