1 HisKA#1
187-254 aa · 68 aa · 16.5% of protein
Raw token
HisKA:187:0.000000000000028:254:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABVF88_RS09265
Histidine kinase, Classic
Bacillus mycoides · GCF_040567675
ClassHKTypeClassicLength412 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040567675#ABVF88_RS09265Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length412 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 412 aa (43.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa412 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
299-410 aa · 112 aa · 27.2% of protein
Raw token
HATPase_c:299:2.5e-31:410:112:109- Raw architecture: HisKA:187:0.000000000000028:254:68:64#HATPase_c:299:2.5e-31:410:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040567675::NZ_JBEXCC010000005.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span173956-175877Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABVF88_09265RefSeq proteinWP_002169195.1
Context group ID
GCF_040567675::NZ_JBEXCC010000005.1::G00024Context members
ABVF88_RS09265ABVF88_RS09270
Partner locus tags
ABVF88_RS09265ABVF88_RS09270
Partner old locus tags
ABVF88_09265ABVF88_09270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002169195.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9R080Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9R080_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABVF88_RS09265Primary locus identifier stored in the genes table.
Old locus tagABVF88_09265Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBEXCC010000005.1Sequence record reported by the local genomic context database.
Genomic interval173 956-175 194 nt1 239 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span173 956-175 877 ntGCF_040567675::NZ_JBEXCC010000005.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040567675::NZ_JBEXCC010000005.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBEXCC010000005.1All displayed genes belong to this local TCS context.
Neighborhood span173 956-175 877 nt1 922 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
173 956 nt175 877 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABVF88_RS09265GCF_040567675#ABVF88_RS09265
HKClassicCurrent focus
173 956-175 194 nt · Reverse (-)
ABVF88_RS09270GCF_040567675#ABVF88_RS09270
RROmpR
175 206-175 877 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290695#IKM_RS24525Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2336697
Simplified PFAM architecture for HKOC_2336697
PFAM domain coverage: 177 / 412 aa (43.0%)
1 aa412 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[188-253] | HATPase_c[299-409]
- Domain count: 2
- Matched identifier: HKOC_2336697
- Positioned domains: HisKA 188-253 ; HATPase_c 299-409
Cluster members and taxonomy
Representative gene: GCF_000290695#IKM_RS24525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_040567675
AssemblyASM4056767v1 · Scaffoldhaploid
Genome composition5 773 031 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 118 · HK 64 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key