1 HAMP#1
161-229 aa · 69 aa · 15.1% of protein
Raw token
HAMP:161:0.0000000000000017:229:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABVF88_RS08860
Histidine kinase, Classic
Bacillus mycoides · GCF_040567675
ClassHKTypeClassicLength456 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040567675#ABVF88_RS08860Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length456 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 456 aa (53.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa456 aa
Domain-by-domain annotation3 items
2 HisKA#2
234-298 aa · 65 aa · 14.3% of protein
Raw token
HisKA:234:0.0000000000000123:298:65:643 HATPase_c#3
346-454 aa · 109 aa · 23.9% of protein
Raw token
HATPase_c:346:2.14e-35:454:109:109- Raw architecture: HAMP:161:0.0000000000000017:229:69:69#HisKA:234:0.0000000000000123:298:65:64#HATPase_c:346:2.14e-35:454:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040567675::NZ_JBEXCC010000005.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span75029-77088Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABVF88_08860RefSeq proteinWP_354656252.1
Context group ID
GCF_040567675::NZ_JBEXCC010000005.1::G00020Context members
ABVF88_RS08855ABVF88_RS08860
Partner locus tags
ABVF88_RS08855ABVF88_RS08860
Partner old locus tags
ABVF88_08855ABVF88_08860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_354656252.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABVF88_RS08860Primary locus identifier stored in the genes table.
Old locus tagABVF88_08860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBEXCC010000005.1Sequence record reported by the local genomic context database.
Genomic interval75 718-77 088 nt1 371 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span75 029-77 088 ntGCF_040567675::NZ_JBEXCC010000005.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040567675::NZ_JBEXCC010000005.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBEXCC010000005.1All displayed genes belong to this local TCS context.
Neighborhood span75 029-77 088 nt2 060 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 029 nt77 088 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABVF88_RS08855GCF_040567675#ABVF88_RS08855
RROmpR
75 029-75 706 nt · Forward (+)
ABVF88_RS08860GCF_040567675#ABVF88_RS08860
HKClassicCurrent focus
75 718-77 088 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040567675#ABVF88_RS08860The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1896936
Simplified PFAM architecture for HKOC_1896936
PFAM domain coverage: 225 / 456 aa (49.3%)
1 aa456 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[178-229] | HisKA[235-298] | HATPase_c[346-454]
- Domain count: 3
- Matched identifier: HKOC_1896936
- Positioned domains: HAMP 178-229 ; HisKA 235-298 ; HATPase_c 346-454
Cluster members and taxonomy
Representative gene: GCF_040567675#ABVF88_RS08860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_040567675
AssemblyASM4056767v1 · Scaffoldhaploid
Genome composition5 773 031 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 118 · HK 64 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key