1 HAMP#1
164-233 aa · 70 aa · 14.3% of protein
Raw token
HAMP:164:0.00000000000000219:233:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABVF88_RS01465
Histidine kinase, Classic
Bacillus mycoides · GCF_040567675
ClassHKTypeClassicLength490 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040567675#ABVF88_RS01465Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length490 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 490 aa (46.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa490 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-323 aa · 66 aa · 13.5% of protein
Raw token
HisKA:258:0.000000000000043:323:66:643 HATPase_c#3
369-460 aa · 92 aa · 18.8% of protein
Raw token
HATPase_c:369:3.39e-16:460:92:109- Raw architecture: HAMP:164:0.00000000000000219:233:70:69#HisKA:258:0.000000000000043:323:66:64#HATPase_c:369:3.39e-16:460:92:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040567675::NZ_JBEXCC010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span312772-314902Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABVF88_01465RefSeq proteinWP_354655884.1
Context group ID
GCF_040567675::NZ_JBEXCC010000001.1::G00004Context members
ABVF88_RS01465ABVF88_RS01470
Partner locus tags
ABVF88_RS01465ABVF88_RS01470
Partner old locus tags
ABVF88_01465ABVF88_01470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_354655884.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABVF88_RS01465Primary locus identifier stored in the genes table.
Old locus tagABVF88_01465Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBEXCC010000001.1Sequence record reported by the local genomic context database.
Genomic interval312 772-314 244 nt1 473 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span312 772-314 902 ntGCF_040567675::NZ_JBEXCC010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040567675::NZ_JBEXCC010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBEXCC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span312 772-314 902 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
312 772 nt314 902 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABVF88_RS01465GCF_040567675#ABVF88_RS01465
HKClassicCurrent focus
312 772-314 244 nt · Reverse (-)
ABVF88_RS01470GCF_040567675#ABVF88_RS01470
RROmpR
314 237-314 902 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040567675#ABVF88_RS01465The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1539273
Simplified PFAM architecture for HKOC_1539273
PFAM domain coverage: 229 / 490 aa (46.7%)
1 aa490 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-233] | HisKA[259-323] | HATPase_c[370-480]
- Domain count: 3
- Matched identifier: HKOC_1539273
- Positioned domains: HAMP 181-233 ; HisKA 259-323 ; HATPase_c 370-480
Cluster members and taxonomy
Representative gene: GCF_040567675#ABVF88_RS01465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_040567675
AssemblyASM4056767v1 · Scaffoldhaploid
Genome composition5 773 031 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 118 · HK 64 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key