1 HAMP#1
156-222 aa · 67 aa · 14.3% of protein
Raw token
HAMP:156:3.11e-16:222:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABWV67_RS00110
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_040370905
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040370905#ABWV67_RS00110Stable P2CS identifier used across views.
GenomeGCF_040370905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage230 / 467 aa (49.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa467 aa
Domain-by-domain annotation3 items
2 HisKA#2
251-312 aa · 62 aa · 13.3% of protein
Raw token
HisKA:251:0.00000000803:312:62:643 HATPase_c#3
358-458 aa · 101 aa · 21.6% of protein
Raw token
HATPase_c:358:4.37e-22:458:101:109- Raw architecture: HAMP:156:3.11e-16:222:67:69#HisKA:251:0.00000000803:312:62:64#HATPase_c:358:4.37e-22:458:101:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040370905::NZ_BAABSA010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17238-19302Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRgna02_00021RefSeq proteinWP_202184062.1
Context group ID
GCF_040370905::NZ_BAABSA010000001.1::G00004Context members
ABWV67_RS00105ABWV67_RS00110
Partner locus tags
ABWV67_RS00105ABWV67_RS00110
Partner old locus tags
Rgna02_00020Rgna02_00021
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_202184062.1Primary protein accession used for annex mappings.
UniProt accessionG0LD24Primary UniProt accession resolved in the annex database.
UniProt IDG0LD24_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABWV67_RS00110Primary locus identifier stored in the genes table.
Old locus tagRgna02_00021Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BAABSA010000001.1Sequence record reported by the local genomic context database.
Genomic interval17 899-19 302 nt1 404 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span17 238-19 302 ntGCF_040370905::NZ_BAABSA010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040370905::NZ_BAABSA010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BAABSA010000001.1All displayed genes belong to this local TCS context.
Neighborhood span17 238-19 302 nt2 065 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 238 nt19 302 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABWV67_RS00105GCF_040370905#ABWV67_RS00105
RROmpR
17 238-17 915 nt · Forward (+)
ABWV67_RS00110GCF_040370905#ABWV67_RS00110
HKClassicCurrent focus
17 899-19 302 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015561245#I2I25_RS10245Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1753678
Simplified PFAM architecture for HKOC_1753678
PFAM domain coverage: 218 / 467 aa (46.7%)
1 aa467 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[170-222] | HisKA[249-312] | HATPase_c[359-459]
- Domain count: 3
- Matched identifier: HKOC_1753678
- Positioned domains: HAMP 170-222 ; HisKA 249-312 ; HATPase_c 359-459
Cluster members and taxonomy
Representative gene: GCF_015561245#I2I25_RS10245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_040370905
AssemblyASM4037090v1 · Contighaploid
Genome composition3 585 723 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 89 · HK 41 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key