1 Response_reg#1
4-113 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:4:1.6e-33:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABWV67_RS00105
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_040370905
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040370905#ABWV67_RS00105Stable P2CS identifier used across views.
GenomeGCF_040370905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 225 aa (81.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 32.9% of protein
Raw token
Trans_reg_C:148:1.6e-34:221:77:77- Raw architecture: Response_reg:4:1.6e-33:113:111:111#Trans_reg_C:148:1.6e-34:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040370905::NZ_BAABSA010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17238-19302Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRgna02_00020RefSeq proteinWP_202184063.1
Context group ID
GCF_040370905::NZ_BAABSA010000001.1::G00004Context members
ABWV67_RS00105ABWV67_RS00110
Partner locus tags
ABWV67_RS00105ABWV67_RS00110
Partner old locus tags
Rgna02_00020Rgna02_00021
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_202184063.1Primary protein accession used for annex mappings.
UniProt accessionG0LD11Primary UniProt accession resolved in the annex database.
UniProt IDG0LD11_MEDGNDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABWV67_RS00105Primary locus identifier stored in the genes table.
Old locus tagRgna02_00020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BAABSA010000001.1Sequence record reported by the local genomic context database.
Genomic interval17 238-17 915 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span17 238-19 302 ntGCF_040370905::NZ_BAABSA010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040370905::NZ_BAABSA010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BAABSA010000001.1All displayed genes belong to this local TCS context.
Neighborhood span17 238-19 302 nt2 065 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 238 nt19 302 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABWV67_RS00105GCF_040370905#ABWV67_RS00105
RROmpRCurrent focus
17 238-17 915 nt · Forward (+)
ABWV67_RS00110GCF_040370905#ABWV67_RS00110
HKClassic
17 899-19 302 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015561245#I2I25_RS10250Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1491777
Simplified PFAM architecture for RROC_1491777
PFAM domain coverage: 183 / 225 aa (81.3%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1491777
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_015561245#I2I25_RS10250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_040370905
AssemblyASM4037090v1 · Contighaploid
Genome composition3 585 723 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 89 · HK 41 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key