1 Response_reg#1
4-107 aa · 104 aa · 21.3% of protein
Raw token
Response_reg:4:2.79e-26:107:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAA082_RS12150
Response regulator, unclassified
[Ruminococcus] torques · GCF_040097015
ClassRRTypeunclassifiedLength489 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040097015#AAA082_RS12150Stable P2CS identifier used across views.
GenomeGCF_040097015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length489 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 489 aa (29.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa489 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
397-438 aa · 42 aa · 8.6% of protein
Raw token
HTH_AraC:397:0.00000011:438:42:42- Raw architecture: Response_reg:4:2.79e-26:107:104:111#HTH_AraC:397:0.00000011:438:42:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040097015::NZ_JBBNPG010000050.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8667-11940Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAA082_12215RefSeq proteinWP_238095069.1
Context group ID
GCF_040097015::NZ_JBBNPG010000050.1::G00025Context members
AAA082_RS12145AAA082_RS12150
Partner locus tags
AAA082_RS12145AAA082_RS12150
Partner old locus tags
AAA082_12210AAA082_12215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_238095069.1Primary protein accession used for annex mappings.
UniProt accessionA0A174BFZ4Primary UniProt accession resolved in the annex database.
UniProt IDA0A174BFZ4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAA082_RS12150Primary locus identifier stored in the genes table.
Old locus tagAAA082_12215Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNPG010000050.1Sequence record reported by the local genomic context database.
Genomic interval10 471-11 940 nt1 470 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 667-11 940 ntGCF_040097015::NZ_JBBNPG010000050.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040097015::NZ_JBBNPG010000050.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNPG010000050.1All displayed genes belong to this local TCS context.
Neighborhood span8 667-11 940 nt3 274 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 667 nt11 940 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAA082_RS12145GCF_040097015#AAA082_RS12145
HKClassic
8 667-10 478 nt · Forward (+)
AAA082_RS12150GCF_040097015#AAA082_RS12150
RRunclassifiedCurrent focus
10 471-11 940 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405315#AQ985_RS06635Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0169668
Simplified PFAM architecture for RROC_0169668
PFAM domain coverage: 183 / 489 aa (37.4%)
1 aa489 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-108] | HTH_18[412-489]
- Domain count: 2
- Matched identifier: RROC_0169668
- Positioned domains: Response_reg 4-108 ; Response_reg 4-108 ; HTH_18 412-489 ; HTH_18 412-489
Cluster members and taxonomy
Representative gene: GCF_001405315#AQ985_RS06635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_040097015
AssemblyASM4009701v1 · Contighaploid
Genome composition2 895 324 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 51 · HK 24 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key