1 HAMP#1
311-379 aa · 69 aa · 11.4% of protein
Raw token
HAMP:311:0.000000000876:379:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAA082_RS12145
Histidine kinase, Classic
[Ruminococcus] torques · GCF_040097015
ClassHKTypeClassicLength603 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040097015#AAA082_RS12145Stable P2CS identifier used across views.
GenomeGCF_040097015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length603 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 603 aa (41.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa603 aa
Domain-by-domain annotation3 items
2 His_kinase#2
394-474 aa · 81 aa · 13.4% of protein
Raw token
His_kinase:394:2.97e-28:474:81:803 HATPase_c#3
494-593 aa · 100 aa · 16.6% of protein
Raw token
HATPase_c:494:0.0000000142:593:104:109- Raw architecture: HAMP:311:0.000000000876:379:69:69#His_kinase:394:2.97e-28:474:81:80#HATPase_c:494:0.0000000142:593:104:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040097015::NZ_JBBNPG010000050.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8667-11940Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAA082_12210RefSeq proteinWP_242854674.1
Context group ID
GCF_040097015::NZ_JBBNPG010000050.1::G00025Context members
AAA082_RS12145AAA082_RS12150
Partner locus tags
AAA082_RS12145AAA082_RS12150
Partner old locus tags
AAA082_12210AAA082_12215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_242854674.1Primary protein accession used for annex mappings.
UniProt accessionA0A174BJ37Primary UniProt accession resolved in the annex database.
UniProt IDA0A174BJ37_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAA082_RS12145Primary locus identifier stored in the genes table.
Old locus tagAAA082_12210Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNPG010000050.1Sequence record reported by the local genomic context database.
Genomic interval8 667-10 478 nt1 812 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 667-11 940 ntGCF_040097015::NZ_JBBNPG010000050.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040097015::NZ_JBBNPG010000050.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNPG010000050.1All displayed genes belong to this local TCS context.
Neighborhood span8 667-11 940 nt3 274 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 667 nt11 940 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAA082_RS12145GCF_040097015#AAA082_RS12145
HKClassicCurrent focus
8 667-10 478 nt · Forward (+)
AAA082_RS12150GCF_040097015#AAA082_RS12150
RRunclassified
10 471-11 940 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022132465#L0N16_RS12370Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0980067
Simplified PFAM architecture for HKOC_0980067
PFAM domain coverage: 227 / 618 aa (36.7%)
1 aa618 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[351-394] | His_kinase[409-489] | HATPase_c[509-610]
- Domain count: 3
- Matched identifier: HKOC_0980067
- Positioned domains: HAMP 351-394 ; His_kinase 409-489 ; HATPase_c 509-610
Cluster members and taxonomy
Representative gene: GCF_022132465#L0N16_RS12370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_040097015
AssemblyASM4009701v1 · Contighaploid
Genome composition2 895 324 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 51 · HK 24 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key