1 Response_reg#1
4-110 aa · 107 aa · 48.4% of protein
Raw token
Response_reg:4:2.37e-26:110:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAA082_RS09980
Response regulator OmpR family
[Ruminococcus] torques · GCF_040097015
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040097015#AAA082_RS09980Stable P2CS identifier used across views.
GenomeGCF_040097015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 221 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-218 aa · 74 aa · 33.5% of protein
Raw token
Trans_reg_C:145:2.21e-23:218:75:77- Raw architecture: Response_reg:4:2.37e-26:110:111:111#Trans_reg_C:145:2.21e-23:218:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040097015::NZ_JBBNPG010000030.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span108-773Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAA082_10030RefSeq proteinWP_009242834.1
Context group ID
GCF_040097015::NZ_JBBNPG010000030.1::G00019Context members
AAA082_RS09980
Partner locus tags
AAA082_RS09980
Partner old locus tags
AAA082_10030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009242834.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAA082_RS09980Primary locus identifier stored in the genes table.
Old locus tagAAA082_10030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNPG010000030.1Sequence record reported by the local genomic context database.
Genomic interval108-773 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span108-773 ntGCF_040097015::NZ_JBBNPG010000030.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040097015::NZ_JBBNPG010000030.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNPG010000030.1All displayed genes belong to this local TCS context.
Neighborhood span108-773 nt666 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
108 nt773 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AAA082_RS09980GCF_040097015#AAA082_RS09980
RROmpRCurrent focus
108-773 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153925#RUMTOR_RS07395Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1677873
Simplified PFAM architecture for RROC_1677873
PFAM domain coverage: 180 / 221 aa (81.4%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-109] | Trans_reg_C[145-218]
- Domain count: 2
- Matched identifier: RROC_1677873
- Positioned domains: Response_reg 4-109 ; Response_reg 4-109 ; Trans_reg_C 145-218 ; Trans_reg_C 145-218
Cluster members and taxonomy
Representative gene: GCF_000153925#RUMTOR_RS07395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_040097015
AssemblyASM4009701v1 · Contighaploid
Genome composition2 895 324 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 51 · HK 24 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key