1 HisKA#1
139-206 aa · 68 aa · 18.5% of protein
Raw token
HisKA:139:0.00000000000016:206:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAA082_RS04090
Histidine kinase, Classic
[Ruminococcus] torques · GCF_040097015
ClassHKTypeClassicLength367 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040097015#AAA082_RS04090Stable P2CS identifier used across views.
GenomeGCF_040097015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length367 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 367 aa (48.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa367 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
251-361 aa · 111 aa · 30.2% of protein
Raw token
HATPase_c:251:7.86e-27:361:112:109- Raw architecture: HisKA:139:0.00000000000016:206:68:64#HATPase_c:251:7.86e-27:361:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040097015::NZ_JBBNPG010000007.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span50978-52781Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAA082_04125RefSeq proteinWP_155236696.1
Context group ID
GCF_040097015::NZ_JBBNPG010000007.1::G00010Context members
AAA082_RS04085AAA082_RS04090
Partner locus tags
AAA082_RS04085AAA082_RS04090
Partner old locus tags
AAA082_04120AAA082_04125
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_155236696.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAA082_RS04090Primary locus identifier stored in the genes table.
Old locus tagAAA082_04125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNPG010000007.1Sequence record reported by the local genomic context database.
Genomic interval51 678-52 781 nt1 104 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span50 978-52 781 ntGCF_040097015::NZ_JBBNPG010000007.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040097015::NZ_JBBNPG010000007.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNPG010000007.1All displayed genes belong to this local TCS context.
Neighborhood span50 978-52 781 nt1 804 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 978 nt52 781 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAA082_RS04085GCF_040097015#AAA082_RS04085
RROmpR
50 978-51 685 nt · Reverse (-)
AAA082_RS04090GCF_040097015#AAA082_RS04090
HKClassicCurrent focus
51 678-52 781 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000432115#Q6412_RS06655Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2705632
Simplified PFAM architecture for HKOC_2705632
PFAM domain coverage: 284 / 367 aa (77.4%)
1 aa367 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[19-126] | HisKA[139-205] | HATPase_c[252-360]
- Domain count: 3
- Matched identifier: HKOC_2705632
- Positioned domains: DUF4118 19-126 ; HisKA 139-205 ; HATPase_c 252-360
Cluster members and taxonomy
Representative gene: GCF_000432115#Q6412_RS06655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_040097015
AssemblyASM4009701v1 · Contighaploid
Genome composition2 895 324 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 51 · HK 24 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key