1 sCache_like#1
70-134 aa · 65 aa · 14.6% of protein
Raw token
sCache_like:70:0.0000000109:134:66:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAA082_RS01755
Histidine kinase, Classic
[Ruminococcus] torques · GCF_040097015
ClassHKTypeClassicLength444 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040097015#AAA082_RS01755Stable P2CS identifier used across views.
GenomeGCF_040097015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length444 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 444 aa (54.5%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa444 aa
Domain-by-domain annotation3 items
2 HisKA#2
220-286 aa · 67 aa · 15.1% of protein
Raw token
HisKA:220:3.64e-17:286:67:643 HATPase_c#3
330-439 aa · 110 aa · 24.8% of protein
Raw token
HATPase_c:330:2.15e-27:439:110:109- Raw architecture: sCache_like:70:0.0000000109:134:66:114#HisKA:220:3.64e-17:286:67:64#HATPase_c:330:2.15e-27:439:110:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040097015::NZ_JBBNPG010000003.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span34687-36692Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAA082_01765RefSeq proteinWP_004845352.1
Context group ID
GCF_040097015::NZ_JBBNPG010000003.1::G00006Context members
AAA082_RS01755AAA082_RS01760
Partner locus tags
AAA082_RS01755AAA082_RS01760
Partner old locus tags
AAA082_01765AAA082_01770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004845352.1Primary protein accession used for annex mappings.
UniProt accessionA5KIX2Primary UniProt accession resolved in the annex database.
UniProt IDA5KIX2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAA082_RS01755Primary locus identifier stored in the genes table.
Old locus tagAAA082_01765Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNPG010000003.1Sequence record reported by the local genomic context database.
Genomic interval34 687-36 021 nt1 335 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span34 687-36 692 ntGCF_040097015::NZ_JBBNPG010000003.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040097015::NZ_JBBNPG010000003.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNPG010000003.1All displayed genes belong to this local TCS context.
Neighborhood span34 687-36 692 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 687 nt36 692 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAA082_RS01755GCF_040097015#AAA082_RS01755
HKClassicCurrent focus
34 687-36 021 nt · Reverse (-)
AAA082_RS01760GCF_040097015#AAA082_RS01760
RROmpR
36 018-36 692 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153925#RUMTOR_RS01920Use this link to inspect the representative gene detail.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2032162
Simplified PFAM architecture for HKOC_2032162
PFAM domain coverage: 237 / 444 aa (53.4%)
1 aa444 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[71-133] | HisKA[220-286] | HATPase_c[333-439]
- Domain count: 3
- Matched identifier: HKOC_2032162
- Positioned domains: sCache_like 71-133 ; HisKA 220-286 ; HATPase_c 333-439
Cluster members and taxonomy
Representative gene: GCF_000153925#RUMTOR_RS01920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_040097015
AssemblyASM4009701v1 · Contighaploid
Genome composition2 895 324 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 51 · HK 24 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key