1 HisKA_3#1
139-205 aa · 67 aa · 19.6% of protein
Raw token
HisKA_3:139:2.19e-16:205:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
WMO38_RS11705
Histidine kinase, Classic
Lachnospira intestinalis · GCF_040096395
ClassHKTypeClassicLength342 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040096395#WMO38_RS11705Stable P2CS identifier used across views.
GenomeGCF_040096395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length342 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 342 aa (45.9%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa342 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
249-338 aa · 90 aa · 26.3% of protein
Raw token
HATPase_c:249:0.0000000000000266:338:103:109- Raw architecture: HisKA_3:139:2.19e-16:205:67:68#HATPase_c:249:0.0000000000000266:338:103:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040096395::NZ_JBBMES010000015.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21366-23060Genomic interval covered by the local TCS group.
Identifiers
Old locus tagWMO38_11730RefSeq proteinWP_349162830.1
Context group ID
GCF_040096395::NZ_JBBMES010000015.1::G00022Context members
WMO38_RS11705WMO38_RS11710
Partner locus tags
WMO38_RS11705WMO38_RS11710
Partner old locus tags
WMO38_11730WMO38_11735
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_349162830.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagWMO38_RS11705Primary locus identifier stored in the genes table.
Old locus tagWMO38_11730Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBMES010000015.1Sequence record reported by the local genomic context database.
Genomic interval21 366-22 394 nt1 029 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 366-23 060 ntGCF_040096395::NZ_JBBMES010000015.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040096395::NZ_JBBMES010000015.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBMES010000015.1All displayed genes belong to this local TCS context.
Neighborhood span21 366-23 060 nt1 695 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 366 nt23 060 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
WMO38_RS11705GCF_040096395#WMO38_RS11705
HKClassicCurrent focus
21 366-22 394 nt · Forward (+)
WMO38_RS11710GCF_040096395#WMO38_RS11710
RRNarL
22 416-23 060 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040096395#WMO38_RS11705The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2833425
Simplified PFAM architecture for HKOC_2833425
PFAM domain coverage: 155 / 342 aa (45.3%)
1 aa342 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[139-203] | HATPase_c[249-338]
- Domain count: 2
- Matched identifier: HKOC_2833425
- Positioned domains: HisKA_3 139-203 ; HATPase_c 249-338
Cluster members and taxonomy
Representative gene: GCF_040096395#WMO38_RS11705
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 133 158 · GCF_040096395
AssemblyASM4009639v1 · Contigreference genome · haploid
Genome composition3 153 493 bp · 37,0% GCLachnospira intestinalis
Signal transduction countsGenes 53 · HK 22 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnospira
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnospira
Related genes
Preview from the same derived genome key