1 Response_reg#1
6-119 aa · 114 aa · 48.5% of protein
Raw token
Response_reg:6:0.0000000000000293:119:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
WMO38_RS01065
Response regulator LytTR family
Lachnospira intestinalis · GCF_040096395
ClassRRTypeLytTRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040096395#WMO38_RS01065Stable P2CS identifier used across views.
GenomeGCF_040096395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage204 / 235 aa (86.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-229 aa · 90 aa · 38.3% of protein
Raw token
LytTR:140:4.16e-18:229:95:98- Raw architecture: Response_reg:6:0.0000000000000293:119:116:111#LytTR:140:4.16e-18:229:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040096395::NZ_JBBMES010000001.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span243062-243769Genomic interval covered by the local TCS group.
Identifiers
Old locus tagWMO38_01065RefSeq proteinWP_349161049.1
Context group ID
GCF_040096395::NZ_JBBMES010000001.1::G00003Context members
WMO38_RS01065
Partner locus tags
WMO38_RS01065
Partner old locus tags
WMO38_01065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_349161049.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagWMO38_RS01065Primary locus identifier stored in the genes table.
Old locus tagWMO38_01065Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBMES010000001.1Sequence record reported by the local genomic context database.
Genomic interval243 062-243 769 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span243 062-243 769 ntGCF_040096395::NZ_JBBMES010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040096395::NZ_JBBMES010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBMES010000001.1All displayed genes belong to this local TCS context.
Neighborhood span243 062-243 769 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
243 062 nt243 769 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
WMO38_RS01065GCF_040096395#WMO38_RS01065
RRLytTRCurrent focus
243 062-243 769 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040096395#WMO38_RS01065The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1039666
Simplified PFAM architecture for RROC_1039666
PFAM domain coverage: 204 / 235 aa (86.8%)
1 aa235 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-119] | LytTR[141-229]
- Domain count: 2
- Matched identifier: RROC_1039666
- Positioned domains: Response_reg 5-119 ; LytTR 141-229
Cluster members and taxonomy
Representative gene: GCF_040096395#WMO38_RS01065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 133 158 · GCF_040096395
AssemblyASM4009639v1 · Contigreference genome · haploid
Genome composition3 153 493 bp · 37,0% GCLachnospira intestinalis
Signal transduction countsGenes 53 · HK 22 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnospira
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnospira
Related genes
Preview from the same derived genome key