1 Response_reg#1
5-112 aa · 108 aa · 29.0% of protein
Raw token
Response_reg:5:7e-25:112:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
WMO38_RS10360
Response regulator, CheB family
Lachnospira intestinalis · GCF_040096395
ClassRRTypeCheBLength372 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040096395#WMO38_RS10360Stable P2CS identifier used across views.
GenomeGCF_040096395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira
Domain signature
Compact overview inferred from the domain field
Response_regCheB_methylest
Protein length372 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage290 / 372 aa (78.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 CheB_methylestSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa372 aa
Domain-by-domain annotation2 items
2 CheB_methylest#2
184-365 aa · 182 aa · 48.9% of protein
Raw token
CheB_methylest:184:5.93e-77:365:182:177- Raw architecture: Response_reg:5:7e-25:112:108:111#CheB_methylest:184:5.93e-77:365:182:177
- Domain description: 1 Response_reg,1 CheB_methylest
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040096395::NZ_JBBMES010000011.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span78187-81418Genomic interval covered by the local TCS group.
Identifiers
Old locus tagWMO38_10380RefSeq proteinWP_349162571.1
Context group ID
GCF_040096395::NZ_JBBMES010000011.1::G00021Context members
WMO38_RS10360WMO38_RS10365
Partner locus tags
WMO38_RS10360WMO38_RS10365
Partner old locus tags
WMO38_10380WMO38_10385
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_349162571.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagWMO38_RS10360Primary locus identifier stored in the genes table.
Old locus tagWMO38_10380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBMES010000011.1Sequence record reported by the local genomic context database.
Genomic interval78 187-79 305 nt1 119 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span78 187-81 418 ntGCF_040096395::NZ_JBBMES010000011.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040096395::NZ_JBBMES010000011.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBMES010000011.1All displayed genes belong to this local TCS context.
Neighborhood span78 187-81 418 nt3 232 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
78 187 nt81 418 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
WMO38_RS10360GCF_040096395#WMO38_RS10360
RRCheBCurrent focus
78 187-79 305 nt · Forward (+)
WMO38_RS10365GCF_040096395#WMO38_RS10365
HKCheA
79 307-81 418 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040096395#WMO38_RS10360The current gene is the representative for this cluster.
PFAM architectureResponse_reg + CheB_methylest2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0438481
Simplified PFAM architecture for RROC_0438481
PFAM domain coverage: 290 / 372 aa (78.0%)
1 aa372 aa
Response_regCheB_methylest
- Simplified architecture: Response_reg + CheB_methylest
- Raw architecture: Response_reg[5-112] | CheB_methylest[184-365]
- Domain count: 2
- Matched identifier: RROC_0438481
- Positioned domains: Response_reg 5-112 ; CheB_methylest 184-365
Cluster members and taxonomy
Representative gene: GCF_040096395#WMO38_RS10360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 133 158 · GCF_040096395
AssemblyASM4009639v1 · Contigreference genome · haploid
Genome composition3 153 493 bp · 37,0% GCLachnospira intestinalis
Signal transduction countsGenes 53 · HK 22 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnospira
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnospira
Related genes
Preview from the same derived genome key