1 HAMP#1
234-301 aa · 68 aa · 12.4% of protein
Raw token
HAMP:234:0.00000000000000121:301:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
WMO38_RS09460
Histidine kinase, Classic
Lachnospira intestinalis · GCF_040096395
ClassHKTypeClassicLength550 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040096395#WMO38_RS09460Stable P2CS identifier used across views.
GenomeGCF_040096395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length550 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 550 aa (44.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa550 aa
Domain-by-domain annotation3 items
2 HisKA#2
326-393 aa · 68 aa · 12.4% of protein
Raw token
HisKA:326:0.00000000000000126:393:68:643 HATPase_c#3
439-549 aa · 111 aa · 20.2% of protein
Raw token
HATPase_c:439:1.93e-18:549:112:109- Raw architecture: HAMP:234:0.00000000000000121:301:68:69#HisKA:326:0.00000000000000126:393:68:64#HATPase_c:439:1.93e-18:549:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040096395::NZ_JBBMES010000009.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span70487-72828Genomic interval covered by the local TCS group.
Identifiers
Old locus tagWMO38_09480RefSeq proteinWP_186837080.1
Context group ID
GCF_040096395::NZ_JBBMES010000009.1::G00019Context members
WMO38_RS09455WMO38_RS09460
Partner locus tags
WMO38_RS09455WMO38_RS09460
Partner old locus tags
WMO38_09475WMO38_09480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_186837080.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7G2M1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7G2M1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagWMO38_RS09460Primary locus identifier stored in the genes table.
Old locus tagWMO38_09480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBMES010000009.1Sequence record reported by the local genomic context database.
Genomic interval71 176-72 828 nt1 653 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span70 487-72 828 ntGCF_040096395::NZ_JBBMES010000009.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040096395::NZ_JBBMES010000009.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBMES010000009.1All displayed genes belong to this local TCS context.
Neighborhood span70 487-72 828 nt2 342 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 487 nt72 828 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
WMO38_RS09455GCF_040096395#WMO38_RS09455
RROmpR
70 487-71 161 nt · Forward (+)
WMO38_RS09460GCF_040096395#WMO38_RS09460
HKClassicCurrent focus
71 176-72 828 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014287955#H8S01_RS09975Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1293515
Simplified PFAM architecture for HKOC_1293515
PFAM domain coverage: 227 / 550 aa (41.3%)
1 aa550 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[250-301] | HisKA[326-391] | HATPase_c[440-548]
- Domain count: 3
- Matched identifier: HKOC_1293515
- Positioned domains: HAMP 250-301 ; HisKA 326-391 ; HATPase_c 440-548
Cluster members and taxonomy
Representative gene: GCF_014287955#H8S01_RS09975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 133 158 · GCF_040096395
AssemblyASM4009639v1 · Contigreference genome · haploid
Genome composition3 153 493 bp · 37,0% GCLachnospira intestinalis
Signal transduction countsGenes 53 · HK 22 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnospira
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnospira
Related genes
Preview from the same derived genome key