1 Response_reg#1
7-116 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:7:3.59e-36:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
WMO38_RS09005
Response regulator OmpR family
Lachnospira intestinalis · GCF_040096395
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040096395#WMO38_RS09005Stable P2CS identifier used across views.
GenomeGCF_040096395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 233 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-230 aa · 75 aa · 32.2% of protein
Raw token
Trans_reg_C:156:5e-33:230:77:77- Raw architecture: Response_reg:7:3.59e-36:116:111:111#Trans_reg_C:156:5e-33:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040096395::NZ_JBBMES010000008.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span102922-105076Genomic interval covered by the local TCS group.
Identifiers
Old locus tagWMO38_09020RefSeq proteinWP_021865198.1
Context group ID
GCF_040096395::NZ_JBBMES010000008.1::G00017Context members
WMO38_RS09000WMO38_RS09005
Partner locus tags
WMO38_RS09000WMO38_RS09005
Partner old locus tags
WMO38_09015WMO38_09020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021865198.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagWMO38_RS09005Primary locus identifier stored in the genes table.
Old locus tagWMO38_09020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBMES010000008.1Sequence record reported by the local genomic context database.
Genomic interval104 375-105 076 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span102 922-105 076 ntGCF_040096395::NZ_JBBMES010000008.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040096395::NZ_JBBMES010000008.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBMES010000008.1All displayed genes belong to this local TCS context.
Neighborhood span102 922-105 076 nt2 155 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
102 922 nt105 076 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
WMO38_RS09000GCF_040096395#WMO38_RS09000
HKClassic
102 922-104 361 nt · Reverse (-)
WMO38_RS09005GCF_040096395#WMO38_RS09005
RROmpRCurrent focus
104 375-105 076 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040096395#WMO38_RS09005The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1109299
Simplified PFAM architecture for RROC_1109299
PFAM domain coverage: 185 / 233 aa (79.4%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-116] | Trans_reg_C[156-230]
- Domain count: 2
- Matched identifier: RROC_1109299
- Positioned domains: Response_reg 7-116 ; Trans_reg_C 156-230
Cluster members and taxonomy
Representative gene: GCF_040096395#WMO38_RS09005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 133 158 · GCF_040096395
AssemblyASM4009639v1 · Contigreference genome · haploid
Genome composition3 153 493 bp · 37,0% GCLachnospira intestinalis
Signal transduction countsGenes 53 · HK 22 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnospira
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnospira
Related genes
Preview from the same derived genome key