1 HAMP#1
185-249 aa · 65 aa · 12.7% of protein
Raw token
HAMP:185:0.0000000000000807:249:65:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
WMO38_RS08370
Histidine kinase, Classic
Lachnospira intestinalis · GCF_040096395
ClassHKTypeClassicLength510 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040096395#WMO38_RS08370Stable P2CS identifier used across views.
GenomeGCF_040096395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length510 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 510 aa (47.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa510 aa
Domain-by-domain annotation3 items
2 HisKA#2
268-332 aa · 65 aa · 12.7% of protein
Raw token
HisKA:268:0.00000000000000137:332:65:643 HATPase_c#3
379-489 aa · 111 aa · 21.8% of protein
Raw token
HATPase_c:379:4.67e-33:489:111:109- Raw architecture: HAMP:185:0.0000000000000807:249:65:69#HisKA:268:0.00000000000000137:332:65:64#HATPase_c:379:4.67e-33:489:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040096395::NZ_JBBMES010000007.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span125371-127594Genomic interval covered by the local TCS group.
Identifiers
Old locus tagWMO38_08375RefSeq proteinWP_021866496.1
Context group ID
GCF_040096395::NZ_JBBMES010000007.1::G00016Context members
WMO38_RS08365WMO38_RS08370
Partner locus tags
WMO38_RS08365WMO38_RS08370
Partner old locus tags
WMO38_08370WMO38_08375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021866496.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagWMO38_RS08370Primary locus identifier stored in the genes table.
Old locus tagWMO38_08375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBMES010000007.1Sequence record reported by the local genomic context database.
Genomic interval126 062-127 594 nt1 533 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span125 371-127 594 ntGCF_040096395::NZ_JBBMES010000007.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040096395::NZ_JBBMES010000007.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBMES010000007.1All displayed genes belong to this local TCS context.
Neighborhood span125 371-127 594 nt2 224 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
125 371 nt127 594 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
WMO38_RS08365GCF_040096395#WMO38_RS08365
RROmpR
125 371-126 060 nt · Reverse (-)
WMO38_RS08370GCF_040096395#WMO38_RS08370
HKClassicCurrent focus
126 062-127 594 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040096395#WMO38_RS08370The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1431418
Simplified PFAM architecture for HKOC_1431418
PFAM domain coverage: 223 / 510 aa (43.7%)
1 aa510 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[202-249] | HisKA[267-331] | HATPase_c[380-489]
- Domain count: 3
- Matched identifier: HKOC_1431418
- Positioned domains: HAMP 202-249 ; HisKA 267-331 ; HATPase_c 380-489
Cluster members and taxonomy
Representative gene: GCF_040096395#WMO38_RS08370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 133 158 · GCF_040096395
AssemblyASM4009639v1 · Contigreference genome · haploid
Genome composition3 153 493 bp · 37,0% GCLachnospira intestinalis
Signal transduction countsGenes 53 · HK 22 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnospira
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnospira
Related genes
Preview from the same derived genome key