1 CheW#1
15-151 aa · 137 aa · 45.5% of protein
Raw token
CheW:15:1.91e-30:151:138:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
WMO38_RS06090
Response regulator CheV family
Lachnospira intestinalis · GCF_040096395
ClassRRTypeCheVLength301 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040096395#WMO38_RS06090Stable P2CS identifier used across views.
GenomeGCF_040096395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length301 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage247 / 301 aa (82.1%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa301 aa
Domain-by-domain annotation2 items
2 Response_reg#2
175-284 aa · 110 aa · 36.5% of protein
Raw token
Response_reg:175:1.03e-19:284:110:111- Raw architecture: CheW:15:1.91e-30:151:138:138#Response_reg:175:1.03e-19:284:110:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040096395::NZ_JBBMES010000004.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span219756-220661Genomic interval covered by the local TCS group.
Identifiers
Old locus tagWMO38_06105RefSeq proteinWP_186836773.1
Context group ID
GCF_040096395::NZ_JBBMES010000004.1::G00011Context members
WMO38_RS06090
Partner locus tags
WMO38_RS06090
Partner old locus tags
WMO38_06105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_186836773.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7G033Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7G033_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagWMO38_RS06090Primary locus identifier stored in the genes table.
Old locus tagWMO38_06105Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBMES010000004.1Sequence record reported by the local genomic context database.
Genomic interval219 756-220 661 nt906 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span219 756-220 661 ntGCF_040096395::NZ_JBBMES010000004.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040096395::NZ_JBBMES010000004.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBMES010000004.1All displayed genes belong to this local TCS context.
Neighborhood span219 756-220 661 nt906 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
219 756 nt220 661 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
WMO38_RS06090GCF_040096395#WMO38_RS06090
RRCheVCurrent focus
219 756-220 661 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014287955#H8S01_RS07485Use this link to inspect the representative gene detail.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0570920
Simplified PFAM architecture for RROC_0570920
PFAM domain coverage: 251 / 301 aa (83.4%)
1 aa301 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[15-150] | Response_reg[175-289]
- Domain count: 2
- Matched identifier: RROC_0570920
- Positioned domains: CheW 15-150 ; Response_reg 175-289
Cluster members and taxonomy
Representative gene: GCF_014287955#H8S01_RS07485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 133 158 · GCF_040096395
AssemblyASM4009639v1 · Contigreference genome · haploid
Genome composition3 153 493 bp · 37,0% GCLachnospira intestinalis
Signal transduction countsGenes 53 · HK 22 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnospira
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnospira
Related genes
Preview from the same derived genome key