1 Response_reg#1
3-113 aa · 111 aa · 46.3% of protein
Raw token
Response_reg:3:0.00000000000000143:113:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAT60_RS05290
Response regulator LytTR family
Blautia wexlerae · GCF_040095395
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040095395#AAAT60_RS05290Stable P2CS identifier used across views.
GenomeGCF_040095395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage201 / 240 aa (83.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-228 aa · 90 aa · 37.5% of protein
Raw token
LytTR:139:0.0000000101:228:95:98- Raw architecture: Response_reg:3:0.00000000000000143:113:114:111#LytTR:139:0.0000000101:228:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040095395::NZ_JBBNFY010000008.1::G00070
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span58649-59371Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAT60_05285RefSeq proteinWP_118613241.1
Context group ID
GCF_040095395::NZ_JBBNFY010000008.1::G00070Context members
AAAT60_RS05290
Partner locus tags
AAAT60_RS05290
Partner old locus tags
AAAT60_05285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118613241.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAT60_RS05290Primary locus identifier stored in the genes table.
Old locus tagAAAT60_05285Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNFY010000008.1Sequence record reported by the local genomic context database.
Genomic interval58 649-59 371 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span58 649-59 371 ntGCF_040095395::NZ_JBBNFY010000008.1::G00070
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040095395::NZ_JBBNFY010000008.1::G00070Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNFY010000008.1All displayed genes belong to this local TCS context.
Neighborhood span58 649-59 371 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 649 nt59 371 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AAAT60_RS05290GCF_040095395#AAAT60_RS05290
RRLytTRCurrent focus
58 649-59 371 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301885#G4888_RS02385Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0891425
Simplified PFAM architecture for RROC_0891425
PFAM domain coverage: 199 / 240 aa (82.9%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-115] | LytTR[139-226]
- Domain count: 2
- Matched identifier: RROC_0891425
- Positioned domains: Response_reg 5-115 ; LytTR 139-226
Cluster members and taxonomy
Representative gene: GCF_013301885#G4888_RS02385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040095395
AssemblyASM4009539v1 · Contighaploid
Genome composition4 140 334 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 120 · HK 58 · RR 61CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key