1 Response_reg#1
4-119 aa · 116 aa · 48.9% of protein
Raw token
Response_reg:4:0.00000000000000152:119:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAT60_RS04180
Response regulator LytTR family
Blautia wexlerae · GCF_040095395
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040095395#AAAT60_RS04180Stable P2CS identifier used across views.
GenomeGCF_040095395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage210 / 237 aa (88.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-230 aa · 94 aa · 39.7% of protein
Raw token
LytTR:137:2.3e-18:230:99:98- Raw architecture: Response_reg:4:0.00000000000000152:119:118:111#LytTR:137:2.3e-18:230:99:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040095395::NZ_JBBNFY010000006.1::G00065
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span121409-122122Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAT60_04180RefSeq proteinWP_173706302.1
Context group ID
GCF_040095395::NZ_JBBNFY010000006.1::G00065Context members
AAAT60_RS04180
Partner locus tags
AAAT60_RS04180
Partner old locus tags
AAAT60_04180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173706302.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAT60_RS04180Primary locus identifier stored in the genes table.
Old locus tagAAAT60_04180Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNFY010000006.1Sequence record reported by the local genomic context database.
Genomic interval121 409-122 122 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span121 409-122 122 ntGCF_040095395::NZ_JBBNFY010000006.1::G00065
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040095395::NZ_JBBNFY010000006.1::G00065Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNFY010000006.1All displayed genes belong to this local TCS context.
Neighborhood span121 409-122 122 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
121 409 nt122 122 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AAAT60_RS04180GCF_040095395#AAAT60_RS04180
RRLytTRCurrent focus
121 409-122 122 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013304535#G5A81_RS05195Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0971883
Simplified PFAM architecture for RROC_0971883
PFAM domain coverage: 208 / 237 aa (87.8%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-119] | LytTR[138-229]
- Domain count: 2
- Matched identifier: RROC_0971883
- Positioned domains: Response_reg 4-119 ; LytTR 138-229
Cluster members and taxonomy
Representative gene: GCF_013304535#G5A81_RS05195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040095395
AssemblyASM4009539v1 · Contighaploid
Genome composition4 140 334 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 120 · HK 58 · RR 61CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key