1 HAMP#1
94-161 aa · 68 aa · 17.3% of protein
Raw token
HAMP:94:0.000000017:161:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAT60_RS02850
Histidine kinase, Classic
Blautia wexlerae · GCF_040095395
ClassHKTypeClassicLength392 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040095395#AAAT60_RS02850Stable P2CS identifier used across views.
GenomeGCF_040095395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length392 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage235 / 392 aa (59.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa392 aa
Domain-by-domain annotation3 items
2 HisKA#2
179-241 aa · 63 aa · 16.1% of protein
Raw token
HisKA:179:0.00000173:241:63:643 HATPase_c#3
287-390 aa · 104 aa · 26.5% of protein
Raw token
HATPase_c:287:3.86e-20:390:106:109- Raw architecture: HAMP:94:0.000000017:161:68:69#HisKA:179:0.00000173:241:63:64#HATPase_c:287:3.86e-20:390:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040095395::NZ_JBBNFY010000004.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span121738-123578Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAT60_02855RefSeq proteinWP_195280212.1
Context group ID
GCF_040095395::NZ_JBBNFY010000004.1::G00052Context members
AAAT60_RS02845AAAT60_RS02850
Partner locus tags
AAAT60_RS02845AAAT60_RS02850
Partner old locus tags
AAAT60_02850AAAT60_02855
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195280212.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAT60_RS02850Primary locus identifier stored in the genes table.
Old locus tagAAAT60_02855Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNFY010000004.1Sequence record reported by the local genomic context database.
Genomic interval122 400-123 578 nt1 179 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span121 738-123 578 ntGCF_040095395::NZ_JBBNFY010000004.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040095395::NZ_JBBNFY010000004.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNFY010000004.1All displayed genes belong to this local TCS context.
Neighborhood span121 738-123 578 nt1 841 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
121 738 nt123 578 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAAT60_RS02845GCF_040095395#AAAT60_RS02845
RROmpR
121 738-122 412 nt · Forward (+)
AAAT60_RS02850GCF_040095395#AAAT60_RS02850
HKClassicCurrent focus
122 400-123 578 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015551045#I2C32_RS10895Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2514027
Simplified PFAM architecture for HKOC_2514027
PFAM domain coverage: 212 / 392 aa (54.1%)
1 aa392 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[114-159] | HisKA[179-241] | HATPase_c[287-389]
- Domain count: 3
- Matched identifier: HKOC_2514027
- Positioned domains: HAMP 114-159 ; HisKA 179-241 ; HATPase_c 287-389
Cluster members and taxonomy
Representative gene: GCF_015551045#I2C32_RS10895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040095395
AssemblyASM4009539v1 · Contighaploid
Genome composition4 140 334 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 120 · HK 58 · RR 61CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key