1 Response_reg#1
86-202 aa · 117 aa · 35.2% of protein
Raw token
Response_reg:86:2.51e-18:202:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAT60_RS02025
Response regulator, FrzZ family
Blautia wexlerae · GCF_040095395
ClassRRTypeFrzZLength332 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040095395#AAAT60_RS02025Stable P2CS identifier used across views.
GenomeGCF_040095395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length332 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 332 aa (56.6%)Merged over positioned domains only.
Domain description2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa332 aa
Domain-by-domain annotation2 items
2 Response_reg#2
230-300 aa · 71 aa · 21.4% of protein
Raw token
Response_reg:230:1.16e-19:300:71:111- Raw architecture: Response_reg:86:2.51e-18:202:117:111#Response_reg:230:1.16e-19:300:71:111
- Domain description: 2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040095395::NZ_JBBNFY010000003.1::G00038
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span96452-97450Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAT60_02025RefSeq proteinWP_349054247.1
Context group ID
GCF_040095395::NZ_JBBNFY010000003.1::G00038Context members
AAAT60_RS02025
Partner locus tags
AAAT60_RS02025
Partner old locus tags
AAAT60_02025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_349054247.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAT60_RS02025Primary locus identifier stored in the genes table.
Old locus tagAAAT60_02025Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNFY010000003.1Sequence record reported by the local genomic context database.
Genomic interval96 452-97 450 nt999 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span96 452-97 450 ntGCF_040095395::NZ_JBBNFY010000003.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040095395::NZ_JBBNFY010000003.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNFY010000003.1All displayed genes belong to this local TCS context.
Neighborhood span96 452-97 450 nt999 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 452 nt97 450 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AAAT60_RS02025GCF_040095395#AAAT60_RS02025
RRFrzZCurrent focus
96 452-97 450 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040095395#AAAT60_RS02025The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0518269
Simplified PFAM architecture for RROC_0518269
PFAM domain coverage: 188 / 332 aa (56.6%)
1 aa332 aa
Response_regResponse_reg
- Simplified architecture: Response_reg + Response_reg
- Raw architecture: Response_reg[86-201] | Response_reg[230-301]
- Domain count: 2
- Matched identifier: RROC_0518269
- Positioned domains: Response_reg 86-201 ; Response_reg 230-301
Cluster members and taxonomy
Representative gene: GCF_040095395#AAAT60_RS02025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040095395
AssemblyASM4009539v1 · Contighaploid
Genome composition4 140 334 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 120 · HK 58 · RR 61CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key