1 Response_reg#1
7-117 aa · 111 aa · 54.4% of protein
Raw token
Response_reg:7:2.38e-25:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAU22_RS22020
Response regulator, unclassified
[Clostridium] symbiosum · GCF_040095205
ClassRRTypeunclassifiedLength204 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040095205#AAAU22_RS22020Stable P2CS identifier used across views.
GenomeGCF_040095205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length204 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 204 aa (54.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa204 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:7:2.38e-25:117:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040095205::NZ_JBBNGG010000153.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span308-2291Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAU22_21970RefSeq proteinWP_003500986.1
Context group ID
GCF_040095205::NZ_JBBNGG010000153.1::G00019Context members
AAAU22_RS22015AAAU22_RS22020
Partner locus tags
AAAU22_RS22015AAAU22_RS22020
Partner old locus tags
AAAU22_21965AAAU22_21970
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003500986.1Primary protein accession used for annex mappings.
UniProt accessionE7GNL4Primary UniProt accession resolved in the annex database.
UniProt IDE7GNL4_CLOS6Display identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAU22_RS22020Primary locus identifier stored in the genes table.
Old locus tagAAAU22_21970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNGG010000153.1Sequence record reported by the local genomic context database.
Genomic interval1 677-2 291 nt615 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span308-2 291 ntGCF_040095205::NZ_JBBNGG010000153.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040095205::NZ_JBBNGG010000153.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNGG010000153.1All displayed genes belong to this local TCS context.
Neighborhood span308-2 291 nt1 984 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
308 nt2 291 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAAU22_RS22015GCF_040095205#AAAU22_RS22015
HKClassic
308-1 711 nt · Forward (+)
AAAU22_RS22020GCF_040095205#AAAU22_RS22020
RRunclassifiedCurrent focus
1 677-2 291 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS12815Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2098309
Simplified PFAM architecture for RROC_2098309
PFAM domain coverage: 111 / 204 aa (54.4%)
1 aa204 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[7-117]
- Domain count: 1
- Matched identifier: RROC_2098309
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS12815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_040095205
AssemblyASM4009520v1 · Contighaploid
Genome composition5 046 588 bp · 47,5% GC[Clostridium] symbiosum
Signal transduction countsGenes 124 · HK 61 · RR 59CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key