1 Response_reg#1
5-108 aa · 104 aa · 44.6% of protein
Raw token
Response_reg:5:8.44e-17:108:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAU22_RS01350
Response regulator OmpR family
[Clostridium] symbiosum · GCF_040095205
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040095205#AAAU22_RS01350Stable P2CS identifier used across views.
GenomeGCF_040095205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 233 aa (77.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-227 aa · 76 aa · 32.6% of protein
Raw token
Trans_reg_C:152:3.69e-27:227:78:77- Raw architecture: Response_reg:5:8.44e-17:108:105:111#Trans_reg_C:152:3.69e-27:227:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040095205::NZ_JBBNGG010000002.1::G00033
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span62758-63459Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAU22_01345RefSeq proteinWP_349157015.1
Context group ID
GCF_040095205::NZ_JBBNGG010000002.1::G00033Context members
AAAU22_RS01350
Partner locus tags
AAAU22_RS01350
Partner old locus tags
AAAU22_01345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_349157015.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAU22_RS01350Primary locus identifier stored in the genes table.
Old locus tagAAAU22_01345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNGG010000002.1Sequence record reported by the local genomic context database.
Genomic interval62 758-63 459 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span62 758-63 459 ntGCF_040095205::NZ_JBBNGG010000002.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040095205::NZ_JBBNGG010000002.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNGG010000002.1All displayed genes belong to this local TCS context.
Neighborhood span62 758-63 459 nt702 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
62 758 nt63 459 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AAAU22_RS01350GCF_040095205#AAAU22_RS01350
RROmpRCurrent focus
62 758-63 459 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040095205#AAAU22_RS01350The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1109283
Simplified PFAM architecture for RROC_1109283
PFAM domain coverage: 183 / 233 aa (78.5%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-111] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1109283
- Positioned domains: Response_reg 5-111 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_040095205#AAAU22_RS01350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_040095205
AssemblyASM4009520v1 · Contighaploid
Genome composition5 046 588 bp · 47,5% GC[Clostridium] symbiosum
Signal transduction countsGenes 124 · HK 61 · RR 59CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key