1 Response_reg#1
4-117 aa · 114 aa · 22.9% of protein
Raw token
Response_reg:4:1.19e-30:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAU22_RS21455
Response regulator, unclassified
[Clostridium] symbiosum · GCF_040095205
ClassRRTypeunclassifiedLength497 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040095205#AAAU22_RS21455Stable P2CS identifier used across views.
GenomeGCF_040095205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length497 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 497 aa (31.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa497 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
437-476 aa · 40 aa · 8.0% of protein
Raw token
HTH_AraC:437:0.0000000000378:476:40:42- Raw architecture: Response_reg:4:1.19e-30:117:114:111#HTH_AraC:437:0.0000000000378:476:40:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040095205::NZ_JBBNGG010000137.1::G00014
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-1493Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAU22_21410RefSeq proteinWP_349158492.1
Context group ID
GCF_040095205::NZ_JBBNGG010000137.1::G00014Context members
AAAU22_RS21455
Partner locus tags
AAAU22_RS21455
Partner old locus tags
AAAU22_21410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_349158492.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAU22_RS21455Primary locus identifier stored in the genes table.
Old locus tagAAAU22_21410Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNGG010000137.1Sequence record reported by the local genomic context database.
Genomic interval1-1 493 nt1 493 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-1 493 ntGCF_040095205::NZ_JBBNGG010000137.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040095205::NZ_JBBNGG010000137.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNGG010000137.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 493 nt1 493 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 493 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AAAU22_RS21455GCF_040095205#AAAU22_RS21455
RRunclassifiedCurrent focus
1-1 493 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS21965Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0112754
Simplified PFAM architecture for RROC_0112754
PFAM domain coverage: 191 / 529 aa (36.1%)
1 aa529 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[449-526]
- Domain count: 2
- Matched identifier: RROC_0112754
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 449-526 ; HTH_18 449-526
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS21965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_040095205
AssemblyASM4009520v1 · Contighaploid
Genome composition5 046 588 bp · 47,5% GC[Clostridium] symbiosum
Signal transduction countsGenes 124 · HK 61 · RR 59CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key