1 Response_reg#1
14-117 aa · 104 aa · 41.4% of protein
Raw token
Response_reg:14:8.2e-18:117:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAU22_RS20440
Response regulator LytTR family
[Clostridium] symbiosum · GCF_040095205
ClassRRTypeLytTRLength251 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_040095205#AAAU22_RS20440Stable P2CS identifier used across views.
GenomeGCF_040095205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length251 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 251 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa251 aa
Domain-by-domain annotation2 items
2 LytTR#2
150-243 aa · 94 aa · 37.5% of protein
Raw token
LytTR:150:0.0000000000303:243:101:98- Raw architecture: Response_reg:14:8.2e-18:117:106:111#LytTR:150:0.0000000000303:243:101:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_040095205::NZ_JBBNGG010000115.1::G00005
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span3202-6231Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAU22_20395RefSeq proteinWP_073929505.1
Context group ID
GCF_040095205::NZ_JBBNGG010000115.1::G00005Context members
AAAU22_RS20440AAAU22_RS20445AAAU22_RS20450
Partner locus tags
AAAU22_RS20440AAAU22_RS20445AAAU22_RS20450
Partner old locus tags
AAAU22_20395AAAU22_20400AAAU22_20405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_073929505.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAU22_RS20440Primary locus identifier stored in the genes table.
Old locus tagAAAU22_20395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNGG010000115.1Sequence record reported by the local genomic context database.
Genomic interval3 202-3 957 nt756 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 202-6 231 ntGCF_040095205::NZ_JBBNGG010000115.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040095205::NZ_JBBNGG010000115.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNGG010000115.1All displayed genes belong to this local TCS context.
Neighborhood span3 202-6 231 nt3 030 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 202 nt6 231 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
AAAU22_RS20440GCF_040095205#AAAU22_RS20440
RRLytTRCurrent focus
3 202-3 957 nt · Forward (+)
AAAU22_RS20445GCF_040095205#AAAU22_RS20445
HKClassic
4 161-5 621 nt · Forward (+)
AAAU22_RS20450GCF_040095205#AAAU22_RS20450
RRunclassified
5 602-6 231 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040095205#AAAU22_RS20440The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0718961
Simplified PFAM architecture for RROC_0718961
PFAM domain coverage: 197 / 251 aa (78.5%)
1 aa251 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[15-117] | LytTR[150-243]
- Domain count: 2
- Matched identifier: RROC_0718961
- Positioned domains: Response_reg 15-117 ; LytTR 150-243
Cluster members and taxonomy
Representative gene: GCF_040095205#AAAU22_RS20440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_040095205
AssemblyASM4009520v1 · Contighaploid
Genome composition5 046 588 bp · 47,5% GC[Clostridium] symbiosum
Signal transduction countsGenes 124 · HK 61 · RR 59CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key