1 Response_reg#1
6-115 aa · 110 aa · 41.0% of protein
Raw token
Response_reg:6:6.82e-23:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAU22_RS15300
Response regulator, unclassified
[Clostridium] symbiosum · GCF_040095205
ClassRRTypeunclassifiedLength268 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040095205#AAAU22_RS15300Stable P2CS identifier used across views.
GenomeGCF_040095205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length268 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 268 aa (41.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa268 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:6.82e-23:115:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040095205::NZ_JBBNGG010000056.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6043-8629Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAU22_15280RefSeq proteinWP_009295968.1
Context group ID
GCF_040095205::NZ_JBBNGG010000056.1::G00051Context members
AAAU22_RS15295AAAU22_RS15300
Partner locus tags
AAAU22_RS15295AAAU22_RS15300
Partner old locus tags
AAAU22_15275AAAU22_15280
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009295968.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW6APF7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW6APF7_CLOSYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAU22_RS15300Primary locus identifier stored in the genes table.
Old locus tagAAAU22_15280Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNGG010000056.1Sequence record reported by the local genomic context database.
Genomic interval7 823-8 629 nt807 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 043-8 629 ntGCF_040095205::NZ_JBBNGG010000056.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040095205::NZ_JBBNGG010000056.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNGG010000056.1All displayed genes belong to this local TCS context.
Neighborhood span6 043-8 629 nt2 587 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 043 nt8 629 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAAU22_RS15295GCF_040095205#AAAU22_RS15295
HKClassic
6 043-7 833 nt · Forward (+)
AAAU22_RS15300GCF_040095205#AAAU22_RS15300
RRunclassifiedCurrent focus
7 823-8 629 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466485#CLOSYM_RS03100Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0619595
Simplified PFAM architecture for RROC_0619595
PFAM domain coverage: 109 / 268 aa (40.7%)
1 aa268 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[6-114]
- Domain count: 1
- Matched identifier: RROC_0619595
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114
Cluster members and taxonomy
Representative gene: GCF_000466485#CLOSYM_RS03100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_040095205
AssemblyASM4009520v1 · Contighaploid
Genome composition5 046 588 bp · 47,5% GC[Clostridium] symbiosum
Signal transduction countsGenes 124 · HK 61 · RR 59CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key