1 Response_reg#1
6-114 aa · 109 aa · 41.4% of protein
Raw token
Response_reg:6:4.71e-25:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAU22_RS13865
Response regulator, unclassified
[Clostridium] symbiosum · GCF_040095205
ClassRRTypeunclassifiedLength263 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040095205#AAAU22_RS13865Stable P2CS identifier used across views.
GenomeGCF_040095205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length263 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage109 / 263 aa (41.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa263 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:4.71e-25:114:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040095205::NZ_JBBNGG010000045.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13494-15577Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAU22_13845RefSeq proteinWP_150026690.1
Context group ID
GCF_040095205::NZ_JBBNGG010000045.1::G00044Context members
AAAU22_RS13860AAAU22_RS13865
Partner locus tags
AAAU22_RS13860AAAU22_RS13865
Partner old locus tags
AAAU22_13840AAAU22_13845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150026690.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW6ASN9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW6ASN9_CLOSYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAU22_RS13865Primary locus identifier stored in the genes table.
Old locus tagAAAU22_13845Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNGG010000045.1Sequence record reported by the local genomic context database.
Genomic interval14 786-15 577 nt792 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 494-15 577 ntGCF_040095205::NZ_JBBNGG010000045.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040095205::NZ_JBBNGG010000045.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNGG010000045.1All displayed genes belong to this local TCS context.
Neighborhood span13 494-15 577 nt2 084 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 494 nt15 577 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAAU22_RS13860GCF_040095205#AAAU22_RS13860
HKClassic
13 494-14 789 nt · Forward (+)
AAAU22_RS13865GCF_040095205#AAAU22_RS13865
RRunclassifiedCurrent focus
14 786-15 577 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008632235#F2P57_RS00690Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0640975
Simplified PFAM architecture for RROC_0640975
PFAM domain coverage: 110 / 263 aa (41.8%)
1 aa263 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-113]
- Domain count: 1
- Matched identifier: RROC_0640975
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113
Cluster members and taxonomy
Representative gene: GCF_008632235#F2P57_RS00690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_040095205
AssemblyASM4009520v1 · Contighaploid
Genome composition5 046 588 bp · 47,5% GC[Clostridium] symbiosum
Signal transduction countsGenes 124 · HK 61 · RR 59CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key