1 Response_reg#1
3-113 aa · 111 aa · 49.3% of protein
Raw token
Response_reg:3:3.52e-40:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAU22_RS12595
Response regulator OmpR family
[Clostridium] symbiosum · GCF_040095205
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040095205#AAAU22_RS12595Stable P2CS identifier used across views.
GenomeGCF_040095205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 225 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-220 aa · 75 aa · 33.3% of protein
Raw token
Trans_reg_C:146:8.4e-23:220:76:77- Raw architecture: Response_reg:3:3.52e-40:113:111:111#Trans_reg_C:146:8.4e-23:220:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040095205::NZ_JBBNGG010000037.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16999-18896Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAU22_12570RefSeq proteinWP_118007488.1
Context group ID
GCF_040095205::NZ_JBBNGG010000037.1::G00038Context members
AAAU22_RS12595AAAU22_RS12600
Partner locus tags
AAAU22_RS12595AAAU22_RS12600
Partner old locus tags
AAAU22_12570AAAU22_12575
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118007488.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAU22_RS12595Primary locus identifier stored in the genes table.
Old locus tagAAAU22_12570Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNGG010000037.1Sequence record reported by the local genomic context database.
Genomic interval16 999-17 676 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 999-18 896 ntGCF_040095205::NZ_JBBNGG010000037.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040095205::NZ_JBBNGG010000037.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNGG010000037.1All displayed genes belong to this local TCS context.
Neighborhood span16 999-18 896 nt1 898 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 999 nt18 896 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAAU22_RS12595GCF_040095205#AAAU22_RS12595
RROmpRCurrent focus
16 999-17 676 nt · Forward (+)
AAAU22_RS12600GCF_040095205#AAAU22_RS12600
HKClassic
17 670-18 896 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003468225#DW877_RS06335Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1479954
Simplified PFAM architecture for RROC_1479954
PFAM domain coverage: 186 / 225 aa (82.7%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1479954
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 146-220 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_003468225#DW877_RS06335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_040095205
AssemblyASM4009520v1 · Contighaploid
Genome composition5 046 588 bp · 47,5% GC[Clostridium] symbiosum
Signal transduction countsGenes 124 · HK 61 · RR 59CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key