1 Response_reg#1
4-117 aa · 114 aa · 30.6% of protein
Raw token
Response_reg:4:7.34e-27:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAU22_RS10375
Response regulator, unclassified
[Clostridium] symbiosum · GCF_040095205
ClassRRTypeunclassifiedLength372 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040095205#AAAU22_RS10375Stable P2CS identifier used across views.
GenomeGCF_040095205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length372 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 372 aa (51.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa372 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
273-315 aa · 43 aa · 11.6% of protein
Raw token
HTH_AraC:273:0.000000000103:315:43:423 HTH_AraC#3
328-363 aa · 36 aa · 9.7% of protein
Raw token
HTH_AraC:328:0.000000572:363:36:42- Raw architecture: Response_reg:4:7.34e-27:117:114:111#HTH_AraC:273:0.000000000103:315:43:42#HTH_AraC:328:0.000000572:363:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040095205::NZ_JBBNGG010000026.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span49067-51770Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAU22_10355RefSeq proteinWP_021643683.1
Context group ID
GCF_040095205::NZ_JBBNGG010000026.1::G00029Context members
AAAU22_RS10375AAAU22_RS10380
Partner locus tags
AAAU22_RS10375AAAU22_RS10380
Partner old locus tags
AAAU22_10355AAAU22_10360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021643683.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW6B183Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW6B183_CLOSYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAU22_RS10375Primary locus identifier stored in the genes table.
Old locus tagAAAU22_10355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNGG010000026.1Sequence record reported by the local genomic context database.
Genomic interval49 067-50 185 nt1 119 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span49 067-51 770 ntGCF_040095205::NZ_JBBNGG010000026.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040095205::NZ_JBBNGG010000026.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNGG010000026.1All displayed genes belong to this local TCS context.
Neighborhood span49 067-51 770 nt2 704 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 067 nt51 770 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAAU22_RS10375GCF_040095205#AAAU22_RS10375
RRunclassifiedCurrent focus
49 067-50 185 nt · Forward (+)
AAAU22_RS10380GCF_040095205#AAAU22_RS10380
HKClassic
50 175-51 770 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466485#CLOSYM_RS20750Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0437434
Simplified PFAM architecture for RROC_0437434
PFAM domain coverage: 192 / 372 aa (51.6%)
1 aa372 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[287-365]
- Domain count: 2
- Matched identifier: RROC_0437434
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 287-365 ; HTH_18 287-365
Cluster members and taxonomy
Representative gene: GCF_000466485#CLOSYM_RS20750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_040095205
AssemblyASM4009520v1 · Contighaploid
Genome composition5 046 588 bp · 47,5% GC[Clostridium] symbiosum
Signal transduction countsGenes 124 · HK 61 · RR 59CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key