1 Response_reg#1
4-109 aa · 106 aa · 23.5% of protein
Raw token
Response_reg:4:2.31e-24:109:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAU22_RS09370
Response regulator NtrC family
[Clostridium] symbiosum · GCF_040095205
ClassRRTypeNtrCLength451 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040095205#AAAU22_RS09370Stable P2CS identifier used across views.
GenomeGCF_040095205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regAAA_5HTH_8
Protein length451 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage263 / 451 aa (58.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 AAA_5,1 HTH_8Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa451 aa
Domain-by-domain annotation3 items
2 AAA_5#2
160-279 aa · 120 aa · 26.6% of protein
Raw token
AAA_5:160:0.00000000142:279:129:1353 HTH_8#3
413-449 aa · 37 aa · 8.2% of protein
Raw token
HTH_8:413:0.00000823:449:37:40- Raw architecture: Response_reg:4:2.31e-24:109:106:111#AAA_5:160:0.00000000142:279:129:135#HTH_8:413:0.00000823:449:37:40
- Domain description: 1 Response_reg,1 AAA_5,1 HTH_8
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040095205::NZ_JBBNGG010000022.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span38961-41637Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAU22_09350RefSeq proteinWP_009297692.1
Context group ID
GCF_040095205::NZ_JBBNGG010000022.1::G00028Context members
AAAU22_RS09370AAAU22_RS09375
Partner locus tags
AAAU22_RS09370AAAU22_RS09375
Partner old locus tags
AAAU22_09350AAAU22_09355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009297692.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9TUQ1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9TUQ1_CLOSYDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAU22_RS09370Primary locus identifier stored in the genes table.
Old locus tagAAAU22_09350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNGG010000022.1Sequence record reported by the local genomic context database.
Genomic interval38 961-40 316 nt1 356 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span38 961-41 637 ntGCF_040095205::NZ_JBBNGG010000022.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040095205::NZ_JBBNGG010000022.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNGG010000022.1All displayed genes belong to this local TCS context.
Neighborhood span38 961-41 637 nt2 677 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 961 nt41 637 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAAU22_RS09370GCF_040095205#AAAU22_RS09370
RRNtrCCurrent focus
38 961-40 316 nt · Reverse (-)
AAAU22_RS09375GCF_040095205#AAAU22_RS09375
HKClassic
40 291-41 637 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466485#CLOSYM_RS01460Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Sigma54_activat + AAA_lid_143 domains in the representative PFAM annotation.
PFAM architecture for RROC_0282447
Simplified PFAM architecture for RROC_0282447
PFAM domain coverage: 340 / 451 aa (75.4%)
1 aa451 aa
Response_regSigma54_activatAAA_lid_14
- Simplified architecture: Response_reg + Sigma54_activat + AAA_lid_14
- Raw architecture: Response_reg[4-110] | Sigma54_activat[138-303] | AAA_lid_14[309-375]
- Domain count: 3
- Matched identifier: RROC_0282447
- Positioned domains: Response_reg 4-110 ; Response_reg 4-110 ; Sigma54_activat 138-303 ; Sigma54_activat 138-303 ; AAA_lid_14 309-375 ; AAA_lid_14 309-375
Cluster members and taxonomy
Representative gene: GCF_000466485#CLOSYM_RS01460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_040095205
AssemblyASM4009520v1 · Contighaploid
Genome composition5 046 588 bp · 47,5% GC[Clostridium] symbiosum
Signal transduction countsGenes 124 · HK 61 · RR 59CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key