1 Response_reg#1
7-113 aa · 107 aa · 48.0% of protein
Raw token
Response_reg:7:3.25e-25:113:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAU22_RS06130
Response regulator OmpR family
[Clostridium] symbiosum · GCF_040095205
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040095205#AAAU22_RS06130Stable P2CS identifier used across views.
GenomeGCF_040095205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 223 aa (80.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-219 aa · 73 aa · 32.7% of protein
Raw token
Trans_reg_C:147:2.18e-24:219:77:77- Raw architecture: Response_reg:7:3.25e-25:113:107:111#Trans_reg_C:147:2.18e-24:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040095205::NZ_JBBNGG010000012.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41761-43622Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAU22_06115RefSeq proteinWP_349157341.1
Context group ID
GCF_040095205::NZ_JBBNGG010000012.1::G00012Context members
AAAU22_RS06130AAAU22_RS06135
Partner locus tags
AAAU22_RS06130AAAU22_RS06135
Partner old locus tags
AAAU22_06115AAAU22_06120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_349157341.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAU22_RS06130Primary locus identifier stored in the genes table.
Old locus tagAAAU22_06115Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNGG010000012.1Sequence record reported by the local genomic context database.
Genomic interval41 761-42 432 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 761-43 622 ntGCF_040095205::NZ_JBBNGG010000012.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040095205::NZ_JBBNGG010000012.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNGG010000012.1All displayed genes belong to this local TCS context.
Neighborhood span41 761-43 622 nt1 862 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 761 nt43 622 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAAU22_RS06130GCF_040095205#AAAU22_RS06130
RROmpRCurrent focus
41 761-42 432 nt · Forward (+)
AAAU22_RS06135GCF_040095205#AAAU22_RS06135
HKClassic
42 429-43 622 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040095205#AAAU22_RS06130The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1623834
Simplified PFAM architecture for RROC_1623834
PFAM domain coverage: 182 / 223 aa (81.6%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[147-219]
- Domain count: 2
- Matched identifier: RROC_1623834
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 147-219
Cluster members and taxonomy
Representative gene: GCF_040095205#AAAU22_RS06130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_040095205
AssemblyASM4009520v1 · Contighaploid
Genome composition5 046 588 bp · 47,5% GC[Clostridium] symbiosum
Signal transduction countsGenes 124 · HK 61 · RR 59CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key