1 Response_reg#1
4-108 aa · 105 aa · 44.5% of protein
Raw token
Response_reg:4:0.00000000000000122:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAU22_RS01480
Response regulator LytTR family
[Clostridium] symbiosum · GCF_040095205
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040095205#AAAU22_RS01480Stable P2CS identifier used across views.
GenomeGCF_040095205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 236 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-228 aa · 92 aa · 39.0% of protein
Raw token
LytTR:137:2.61e-21:228:98:98- Raw architecture: Response_reg:4:0.00000000000000122:108:108:111#LytTR:137:2.61e-21:228:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040095205::NZ_JBBNGG010000002.1::G00034
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span90253-90963Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAU22_01475RefSeq proteinWP_349157040.1
Context group ID
GCF_040095205::NZ_JBBNGG010000002.1::G00034Context members
AAAU22_RS01480
Partner locus tags
AAAU22_RS01480
Partner old locus tags
AAAU22_01475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_349157040.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAU22_RS01480Primary locus identifier stored in the genes table.
Old locus tagAAAU22_01475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNGG010000002.1Sequence record reported by the local genomic context database.
Genomic interval90 253-90 963 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span90 253-90 963 ntGCF_040095205::NZ_JBBNGG010000002.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040095205::NZ_JBBNGG010000002.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNGG010000002.1All displayed genes belong to this local TCS context.
Neighborhood span90 253-90 963 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
90 253 nt90 963 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AAAU22_RS01480GCF_040095205#AAAU22_RS01480
RRLytTRCurrent focus
90 253-90 963 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040095205#AAAU22_RS01480The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1009580
Simplified PFAM architecture for RROC_1009580
PFAM domain coverage: 195 / 236 aa (82.6%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-108] | LytTR[138-227]
- Domain count: 2
- Matched identifier: RROC_1009580
- Positioned domains: Response_reg 4-108 ; LytTR 138-227
Cluster members and taxonomy
Representative gene: GCF_040095205#AAAU22_RS01480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_040095205
AssemblyASM4009520v1 · Contighaploid
Genome composition5 046 588 bp · 47,5% GC[Clostridium] symbiosum
Signal transduction countsGenes 124 · HK 61 · RR 59CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key