1 Response_reg#1
7-111 aa · 105 aa · 8.4% of protein
Raw token
Response_reg:7:2.67e-22:111:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAAU22_RS00345
Response regulator, RpfG family
[Clostridium] symbiosum · GCF_040095205
ClassRRTypeRpfGLength1250 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040095205#AAAU22_RS00345Stable P2CS identifier used across views.
GenomeGCF_040095205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regHDPAS_3GGDEF
Protein length1250 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage533 / 1250 aa (42.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,2 PAS_3,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1250 aa
Domain-by-domain annotation5 items
2 HD#2
202-299 aa · 98 aa · 7.8% of protein
Raw token
HD:202:0.000000000000459:299:98:1103 PAS_3#3
540-623 aa · 84 aa · 6.7% of protein
Raw token
PAS_3:540:3.96e-18:623:84:894 PAS_3#4
669-757 aa · 89 aa · 7.1% of protein
Raw token
PAS_3:669:0.00000000000222:757:91:895 GGDEF#5
774-930 aa · 157 aa · 12.6% of protein
Raw token
GGDEF:774:6.93e-41:930:161:160- Raw architecture: Response_reg:7:2.67e-22:111:106:111#HD:202:0.000000000000459:299:98:110#PAS_3:540:3.96e-18:623:84:89#PAS_3:669:0.00000000000222:757:91:89#GGDEF:774:6.93e-41:930:161:160
- Domain description: 1 Response_reg,1 HD,2 PAS_3,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040095205::NZ_JBBNGG010000001.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span81476-85228Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAAAU22_00345RefSeq proteinWP_009298645.1
Context group ID
GCF_040095205::NZ_JBBNGG010000001.1::G00024Context members
AAAU22_RS00345
Partner locus tags
AAAU22_RS00345
Partner old locus tags
AAAU22_00345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009298645.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAAU22_RS00345Primary locus identifier stored in the genes table.
Old locus tagAAAU22_00345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBNGG010000001.1Sequence record reported by the local genomic context database.
Genomic interval81 476-85 228 nt3 753 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span81 476-85 228 ntGCF_040095205::NZ_JBBNGG010000001.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040095205::NZ_JBBNGG010000001.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBNGG010000001.1All displayed genes belong to this local TCS context.
Neighborhood span81 476-85 228 nt3 753 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 476 nt85 228 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AAAU22_RS00345GCF_040095205#AAAU22_RS00345
RRRpfGCurrent focus
81 476-85 228 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040095205#AAAU22_RS00345The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_5 + PAS_3 + PAS_3 + GGDEF5 domains in the representative PFAM annotation.
PFAM architecture for RROC_0006069
Simplified PFAM architecture for RROC_0006069
PFAM domain coverage: 570 / 1250 aa (45.6%)
1 aa1250 aa
Response_regHD_5PAS_3PAS_3GGDEF
- Simplified architecture: Response_reg + HD_5 + PAS_3 + PAS_3 + GGDEF
- Raw architecture: Response_reg[7-118] | HD_5[190-318] | PAS_3[540-623] | PAS_3[669-757] | GGDEF[775-930]
- Domain count: 5
- Matched identifier: RROC_0006069
- Positioned domains: Response_reg 7-118 ; HD_5 190-318 ; PAS_3 540-623 ; PAS_3 669-757 ; GGDEF 775-930
Cluster members and taxonomy
Representative gene: GCF_040095205#AAAU22_RS00345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_040095205
AssemblyASM4009520v1 · Contighaploid
Genome composition5 046 588 bp · 47,5% GC[Clostridium] symbiosum
Signal transduction countsGenes 124 · HK 61 · RR 59CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key